Literature DB >> 11165518

Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases.

M Mann1, A Pandey.   

Abstract

Mass spectrometry-based proteomic methodologies can be used to annotate both nucleotide and protein sequence databases. Because such data have to be derived from proteins, they can be used to identify coding regions of the genome as well as provide the complete primary sequence of proteins and their expression patterns and post-translational modifications.

Mesh：

Substances：

Year:  2001        PMID： 11165518     DOI： 10.1016/s0968-0004(00)01726-6

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  18 in total

Review 1.  Proteomics and a future generation of plant molecular biologists.

Authors:  Justin K M Roberts
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction.

Authors:  Jean-Benoît Peltier; Olof Emanuelsson; Dário E Kalume; Jimmy Ytterberg; Giulia Friso; Andrea Rudella; David A Liberles; Linda Söderberg; Peter Roepstorff; Gunnar von Heijne; Klaas J van Wijk
Journal:  Plant Cell       Date:  2002-01       Impact factor: 11.277

3.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

4.  Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.

Authors:  Nitin Gupta; Stephen Tanner; Navdeep Jaitly; Joshua N Adkins; Mary Lipton; Robert Edwards; Margaret Romine; Andrei Osterman; Vineet Bafna; Richard D Smith; Pavel A Pevzner
Journal:  Genome Res       Date:  2007-08-09       Impact factor: 9.043

5.  Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.

Authors:  Dhanashree S Kelkar; Dhirendra Kumar; Praveen Kumar; Lavanya Balakrishnan; Babylakshmi Muthusamy; Amit Kumar Yadav; Priyanka Shrivastava; Arivusudar Marimuthu; Sridhar Anand; Hema Sundaram; Reena Kingsbury; H C Harsha; Bipin Nair; T S Keshava Prasad; Devendra Singh Chauhan; Kiran Katoch; Vishwa Mohan Katoch; Prahlad Kumar; Raghothama Chaerkady; Srinivasan Ramachandran; Debasis Dash; Akhilesh Pandey
Journal:  Mol Cell Proteomics       Date:  2011-10-03       Impact factor: 5.911

6.  A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.

Authors:  Raghothama Chaerkady; Dhanashree S Kelkar; Babylakshmi Muthusamy; Kumaran Kandasamy; Sutopa B Dwivedi; Nandini A Sahasrabuddhe; Min-Sik Kim; Santosh Renuse; Sneha M Pinto; Rakesh Sharma; Harsh Pawar; Nirujogi Raja Sekhar; Ajeet Kumar Mohanty; Derese Getnet; Yi Yang; Jun Zhong; Aditya P Dash; Robert M MacCallum; Bernard Delanghe; Godfree Mlambo; Ashwani Kumar; T S Keshava Prasad; Mobolaji Okulate; Nirbhay Kumar; Akhilesh Pandey
Journal:  Genome Res       Date:  2011-07-27       Impact factor: 9.043

7.  Mapping the proteome of barrel medic (Medicago truncatula).

Authors:  Bonnie S Watson; Victor S Asirvatham; Liangjiang Wang; Lloyd W Sumner
Journal:  Plant Physiol       Date:  2003-03       Impact factor: 8.340

8.  Human protein reference database as a discovery resource for proteomics.

Authors:  Suraj Peri; J Daniel Navarro; Troels Z Kristiansen; Ramars Amanchy; Vineeth Surendranath; Babylakshmi Muthusamy; T K B Gandhi; K N Chandrika; Nandan Deshpande; Shubha Suresh; B P Rashmi; K Shanker; N Padma; Vidya Niranjan; H C Harsha; Naveen Talreja; B M Vrushabendra; M A Ramya; A J Yatish; Mary Joy; H N Shivashankar; M P Kavitha; Minal Menezes; Dipanwita Roy Choudhury; Neelanjana Ghosh; R Saravana; Sreenath Chandran; Sujatha Mohan; Chandra Kiran Jonnalagadda; C K Prasad; Chandan Kumar-Sinha; Krishna S Deshpande; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  Proteomics: challenges, techniques and possibilities to overcome biological sample complexity.

Authors:  Kondethimmanahalli Chandramouli; Pei-Yuan Qian
Journal:  Hum Genomics Proteomics       Date:  2009-12-08

10.  Comparative proteomics of Cannabis sativa plant tissues.

Authors:  Tri J Raharjo; Ivy Widjaja; Sittiruk Roytrakul; Robert Verpoorte
Journal:  J Biomol Tech       Date:  2004-06
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.