Literature DB >> 11165501

Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed.

J M Bujnicki1, M Radlinska, L Rychlewski.   

Abstract

Using algorithms for protein sequence analysis we predict that some of the canonical type II and type IIS restriction enzymes have an active site with a substantially different architecture and fold from the "typical" PD-(D/E)xK superfamily. These results suggest that they are related to nucleases from the HNH and GIY-YIG superfamilies.

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Year:  2001        PMID： 11165501     DOI： 10.1016/s0968-0004(00)01690-x

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  28 in total

1.  Functional cooperation between exonucleases and endonucleases--basis for the evolution of restriction enzymes.

Authors:  Nidhanapathi K Raghavendra; Desirazu N Rao
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

2.  Protein stability indicates divergent evolution of PD-(D/E)XK type II restriction endonucleases.

Authors:  Monika Fuxreiter; István Simon
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

3.  Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily.

Authors:  Matheshwaran Saravanan; Janusz M Bujnicki; Iwona A Cymerman; Desirazu N Rao; Valakunja Nagaraja
Journal:  Nucleic Acids Res       Date:  2004-11-23       Impact factor: 16.971

4.  Identification of a single HNH active site in type IIS restriction endonuclease Eco31I.

Authors:  Arturas Jakubauskas; Jolanta Giedriene; Janusz M Bujnicki; Arvydas Janulaitis
Journal:  J Mol Biol       Date:  2007-05-04       Impact factor: 5.469

5.  The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif.

Authors:  Lei Zhao; Richard P Bonocora; David A Shub; Barry L Stoddard
Journal:  EMBO J       Date:  2007-04-05       Impact factor: 11.598

Review 6.  Type II restriction endonucleases--a historical perspective and more.

Authors:  Alfred Pingoud; Geoffrey G Wilson; Wolfgang Wende
Journal:  Nucleic Acids Res       Date:  2014-05-30       Impact factor: 16.971

Review 7.  Structure and function of type II restriction endonucleases.

Authors:  A Pingoud; A Jeltsch
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

8.  Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.

Authors:  Jerzy Orlowski; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2008-05-02       Impact factor: 16.971

9.  HNHDb: a database on pattern based classification of HNH domains reveals functional relevance of sequence patterns and domain associations.

Authors:  Alaguraj Veluchamy; Sujitha Mary; Vishal Acharya; Preethi Mehta; Taru Deva; Sankaran Krishnaswamy
Journal:  Bioinformation       Date:  2009-09-06

10.  Cofactor requirement of HpyAV restriction endonuclease.

Authors:  Siu-Hong Chan; Lars Opitz; Lauren Higgins; Diana O'loane; Shuang-Yong Xu
Journal:  PLoS One       Date:  2010-02-05       Impact factor: 3.240
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