Literature DB >> 11164050

The late stage of genetic code structuring took place at a high temperature.

M Di Giulio1.   

Abstract

The correlation between the optimal growth temperature of organisms and a thermophily index based on the propensity of amino acids to enter more frequently into (hyper)thermophile proteins is used to conduct an analysis aiming to establish whether genetic code structuring took place at a low or a high temperature. If the number of codons attributed to the various amino acids in the genetic code constitutes an estimate of the mean amino acid composition of proteins produced when the genetic code was definitively structured, then the thermophily index can also be associated to the genetic code. This value and the sampling of the variable thermophily index of different alignments of protein sequences from mesophile, thermophile and hyperthermophile species make it possible to establish, with an extremely high statistical confidence, that the late stage of genetic code structuring took place in a hyperthermophile (or thermophile) 'organism'. Moreover the 95% confidence interval of the temperature at which the genetic code was fixed turned out to be 91+/-24 degrees C. These observations seem to support the hypothesis that the origin of life might have taken place at a high temperature.

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Year:  2000        PMID: 11164050     DOI: 10.1016/s0378-1119(00)00522-9

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  9 in total

1.  Two rules of distribution of amino acids in the code table indicate chimeric nature of the genetic code.

Authors:  YuN Zhuravlev
Journal:  Dokl Biochem Biophys       Date:  2002 Mar-Apr       Impact factor: 0.788

2.  The universal ancestor and the ancestor of bacteria were hyperthermophiles.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2003-12       Impact factor: 2.395

Review 3.  The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner.

Authors:  Nicolas Glansdorff; Ying Xu; Bernard Labedan
Journal:  Biol Direct       Date:  2008-07-09       Impact factor: 4.540

Review 4.  Optimization models and the structure of the genetic code.

Authors:  J L Jestin; A Kempf
Journal:  J Mol Evol       Date:  2009-10-20       Impact factor: 2.395

5.  Behavior of a hammerhead ribozyme in aqueous solution at medium to high temperatures.

Authors:  Nizar El-Murr; Marie-Christine Maurel; Martina Rihova; Jacques Vergne; Guy Hervé; Mikio Kato; Kunio Kawamura
Journal:  Naturwissenschaften       Date:  2012-08-23

6.  Primordial chemistry and enzyme evolution in a hot environment.

Authors:  Richard Wolfenden
Journal:  Cell Mol Life Sci       Date:  2014-03-13       Impact factor: 9.261

7.  Chimeric Translation for Mitochondrial Peptides: Regular and Expanded Codons.

Authors:  Hervé Seligmann; Ganesh Warthi
Journal:  Comput Struct Biotechnol J       Date:  2019-08-23       Impact factor: 7.271

8.  Phylogenetic analysis of mutational robustness based on codon usage supports that the standard genetic code does not prefer extreme environments.

Authors:  Ádám Radványi; Ádám Kun
Journal:  Sci Rep       Date:  2021-05-26       Impact factor: 4.379

9.  Comparative analysis of barophily-related amino acid content in protein domains of Pyrococcus abyssi and Pyrococcus furiosus.

Authors:  Liudmila S Yafremava; Massimo Di Giulio; Gustavo Caetano-Anollés
Journal:  Archaea       Date:  2013-09-26       Impact factor: 3.273

  9 in total

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