Literature DB >> 11159338

A collection of well characterised integral membrane proteins.

S Möller1, E V Kriventseva, R Apweiler.   

Abstract

SUMMARY: A collection of transmembrane proteins with annotated transmembrane regions, for which good experimental evidence exist, was created as a test or training set for algorithms to predict transmembrane regions in proteins.

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Substances：

Year:  2000        PMID： 11159338     DOI： 10.1093/bioinformatics/16.12.1159

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  20 in total

1.  TMPDB: a database of experimentally-characterized transmembrane topologies.

Authors:  Masami Ikeda; Masafumi Arai; Toshikatsu Okuno; Toshio Shimizu
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.

Authors:  E V Kriventseva; F Servant; R Apweiler
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Transmembrane helix predictions revisited.

Authors:  Chien Peter Chen; Andrew Kernytsky; Burkhard Rost
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

4.  Prediction of partial membrane protein topologies using a consensus approach.

Authors:  Johan Nilsson; Bengt Persson; Gunnar Von Heijne
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

5.  Long membrane helices and short loops predicted less accurately.

Authors:  Chien Peter Chen; Burkhard Rost
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

6.  BPROMPT: A consensus server for membrane protein prediction.

Authors:  Paul D Taylor; Teresa K Attwood; Darren R Flower
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

7.  Static benchmarking of membrane helix predictions.

Authors:  Andrew Kernytsky; Burkhard Rost
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

8.  Servers for sequence-structure relationship analysis and prediction.

Authors:  Zsuzsanna Dosztányi; Csaba Magyar; Gábor E Tusnády; Miklós Cserzo; András Fiser; István Simon
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

9.  Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based method.

Authors:  Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

10.  Improved membrane protein topology prediction by domain assignments.

Authors:  Andreas Bernsel; Gunnar Von Heijne
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725
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