Literature DB >> 11159334

IE-Kb: intron exon knowledge base.

M K Sakharkar1, P Kangueane, T W Woon, T W Tan, P R Kolatkar, M Long, S J de Souza.   

Abstract

SUMMARY: IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.

Mesh:

Year:  2000        PMID: 11159334     DOI: 10.1093/bioinformatics/16.12.1151

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  ExInt: an Exon Intron Database.

Authors:  M Sakharkar; F Passetti; J E de Souza; M Long; S J de Souza
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Identification of minimal eukaryotic introns through GeneBase, a user-friendly tool for parsing the NCBI Gene databank.

Authors:  Allison Piovesan; Maria Caracausi; Marco Ricci; Pierluigi Strippoli; Lorenza Vitale; Maria Chiara Pelleri
Journal:  DNA Res       Date:  2015-11-17       Impact factor: 4.458

3.  Comprehensive database and evolutionary dynamics of U12-type introns.

Authors:  Devlin C Moyer; Graham E Larue; Courtney E Hershberger; Scott W Roy; Richard A Padgett
Journal:  Nucleic Acids Res       Date:  2020-07-27       Impact factor: 16.971

  3 in total

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