Literature DB >> 11159323

PhyloDraw: a phylogenetic tree drawing system.

J H Choi1, H Y Jung, H S Kim, H G Cho.   

Abstract

UNLABELLED: PhyloDraw is a unified viewing tool for phylogenetic trees. PhyloDraw supports various kinds of multi-alignment formats (Dialign2, Clustal-W, Phylip format, NEXUS, MEGA, and pairwise distance matrix) and visualizes various kinds of tree diagrams, e.g. rectangular cladogram, slanted cladogram, phylogram, unrooted tree, and radial tree. By using several control parameters, users can easily and interactively manipulate the shape of phylogenetic trees. This program can export the final tree layout to BMP (bitmap image format) and PostScript. AVAILABILITY: http://pearl.cs.pusan.ac.kr/phylodraw/ CONTACT: jhchoi@pearl.cs.pusan.ac.kr

Entities:  

Mesh：

Year:  2000        PMID： 11159323     DOI： 10.1093/bioinformatics/16.11.1056

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  53 in total

1.  Prediction of signal recognition particle RNA genes.

Authors:  Marco Regalia; Magnus Alm Rosenblad; Tore Samuelsson
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

2.  The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance.

Authors:  Jian-Yong Li; Yan-Lei Fu; Sharon M Pike; Juan Bao; Wang Tian; Yu Zhang; Chun-Zhu Chen; Yi Zhang; Hong-Mei Li; Jing Huang; Le-Gong Li; Julian I Schroeder; Walter Gassmann; Ji-Ming Gong
Journal:  Plant Cell       Date:  2010-05-25       Impact factor: 11.277

3.  Tumor cells disseminate early, but immunosurveillance limits metastatic outgrowth, in a mouse model of melanoma.

Authors:  Jo Eyles; Anne-Laure Puaux; Xiaojie Wang; Benjamin Toh; Celine Prakash; Michelle Hong; Tze Guan Tan; Lin Zheng; Lai Chun Ong; Yi Jin; Masashi Kato; Armelle Prévost-Blondel; Pierce Chow; Henry Yang; Jean-Pierre Abastado
Journal:  J Clin Invest       Date:  2010-05-24       Impact factor: 14.808

4.  A newly discovered human alpha-globin gene.

Authors:  Sung-Ho Goh; Y Terry Lee; Natarajan V Bhanu; Margaret C Cam; Richard Desper; Brian M Martin; Ramy Moharram; Robert B Gherman; Jeffery L Miller
Journal:  Blood       Date:  2005-04-26       Impact factor: 22.113

5.  Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif.

Authors:  Valentina A Shchedrina; Sergey V Novoselov; Mikalai Yu Malinouski; Vadim N Gladyshev
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-22       Impact factor: 11.205

6.  New taxa in Alphaproteobacteria: Brevundimonas olei sp. nov., an esterase-producing bacterium.

Authors:  Myungjin Lee; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

7.  Cloning and functional identification of slc5a12 as a sodium-coupled low-affinity transporter for monocarboxylates (SMCT2).

Authors:  Sonne R Srinivas; Elangovan Gopal; Lina Zhuang; Shirou Itagaki; Pamela M Martin; You-Jun Fei; Vadivel Ganapathy; Puttur D Prasad
Journal:  Biochem J       Date:  2005-12-15       Impact factor: 3.857

8.  Divergent modes of glycan recognition by a new family of carbohydrate-binding modules.

Authors:  Katie J Gregg; Ron Finn; D Wade Abbott; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2008-02-21       Impact factor: 5.157

9.  Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information.

Authors:  Yonqing Zhang; Supriyo De; John R Garner; Kirstin Smith; S Alex Wang; Kevin G Becker
Journal:  BMC Med Genomics       Date:  2010-01-21       Impact factor: 3.063

10.  Performance of optimized McRAPD in identification of 9 yeast species frequently isolated from patient samples: potential for automation.

Authors:  Jitka Trtkova; Petr Pavlicek; Lenka Ruskova; Petr Hamal; Dagmar Koukalova; Vladislav Raclavsky
Journal:  BMC Microbiol       Date:  2009-11-10       Impact factor: 3.605
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