Literature DB >> 11159322

BLAST Search Updater: a notification system for new database matches.

M Boone1, C Upton.   

Abstract

UNLABELLED: BLAST Search Updater (BSU) can help molecular biologists perform large numbers of BLAST searches routinely and screen the results for novel matches. The search result files (HTML format) and delta files (novel matches) are WWW viewable and BSU also emails users alignments of new matches. AVAILABILITY: BSU runs on UNIX machines and is freely available to academic users at http://athena.bioc.uvic.ca/genomes/. Additional figures and description are also available. CONTACT: cupton@uvic.ca

Mesh:

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Year:  2000        PMID: 11159322     DOI: 10.1093/bioinformatics/16.11.1054

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  PDBalert: automatic, recurrent remote homology tracking and protein structure prediction.

Authors:  Vatsal Agarwal; Michael Remmert; Andreas Biegert; Johannes Söding
Journal:  BMC Struct Biol       Date:  2008-11-25

2.  Recent Hits Acquired by BLAST (ReHAB): a tool to identify new hits in sequence similarity searches.

Authors:  Joe Whitney; David J Esteban; Chris Upton
Journal:  BMC Bioinformatics       Date:  2005-02-08       Impact factor: 3.169

3.  Re-searcher: a system for recurrent detection of homologous protein sequences.

Authors:  Valdemaras Repsys; Mindaugas Margelevicius; Ceslovas Venclovas
Journal:  BMC Bioinformatics       Date:  2008-06-27       Impact factor: 3.169

  3 in total

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