Literature DB >> 11159320

T(E)Xtopo: shaded membrane protein topology plots in LAT(E)X2epsilon.

E Beitz1.   

Abstract

UNLABELLED: T(E)Xtopo is a LAT(E)X2epsilon macro package for plotting topology data directly from PHD predictions or SwissProt database files in publication-ready quality. The plot can be shaded automatically to emphasize conserved residues or functional properties of the residue sidechains. The addition of rich decorations, such as labels, annotations and legends, is easily accomplished. AVAILABILITY: The T(E)Xtopo macro package and a full on-line documentation are freely available at http://homepages.uni-tuebingen.de/beitz/ CONTACT: eric.beitz@uni-tuebingen.de

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Year:  2000        PMID： 11159320     DOI： 10.1093/bioinformatics/16.11.1050

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  32 in total

1.  Building protein diagrams on the web with the residue-based diagram editor RbDe.

Authors:  Lucy Skrabanek; Fabien Campagne; Harel Weinstein
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 2.  Invertebrate aquaporins: a review.

Authors:  Ewan M Campbell; Andrew Ball; Stefan Hoppler; Alan S Bowman
Journal:  J Comp Physiol B       Date:  2008-07-02       Impact factor: 2.200

3.  The intracellular parasite Toxoplasma gondii harbors three druggable FNT-type formate and l-lactate transporters in the plasma membrane.

Authors:  Holger Erler; Bingjian Ren; Nishith Gupta; Eric Beitz
Journal:  J Biol Chem       Date:  2018-09-20       Impact factor: 5.157

4.  Functional characterization of a novel aquaporin from Dictyostelium discoideum amoebae implies a unique gating mechanism.

Authors:  Julia von Bülow; Annika Müller-Lucks; Lei Kai; Frank Bernhard; Eric Beitz
Journal:  J Biol Chem       Date:  2012-01-18       Impact factor: 5.157

5.  Vibrio cholerae VciB Mediates Iron Reduction.

Authors:  Eric D Peng; Shelley M Payne
Journal:  J Bacteriol       Date:  2017-05-25       Impact factor: 3.490

6.  The N-terminal Ankyrin Repeat Domain Is Not Required for Electrophile and Heat Activation of the Purified Mosquito TRPA1 Receptor.

Authors:  Sabeen Survery; Lavanya Moparthi; Per Kjellbom; Edward D Högestätt; Peter M Zygmunt; Urban Johanson
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

7.  Identification of DPAGT1 as a new gene in which mutations cause a congenital myasthenic syndrome.

Authors:  Katsiaryna Belaya; Sarah Finlayson; Judith Cossins; Wei Wei Liu; Susan Maxwell; Jacqueline Palace; David Beeson
Journal:  Ann N Y Acad Sci       Date:  2012-12       Impact factor: 5.691

8.  Molecular dissection of water and glycerol permeability of the aquaglyceroporin from Plasmodium falciparum by mutational analysis.

Authors:  Eric Beitz; Slavica Pavlovic-Djuranovic; Masato Yasui; Peter Agre; Joachim E Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-20       Impact factor: 11.205

9.  Alteration in glycerol and metalloid permeability by a single mutation in the extracellular C-loop of Leishmania major aquaglyceroporin LmAQP1.

Authors:  Nestor L Uzcategui; Yao Zhou; Katherine Figarella; Jun Ye; Rita Mukhopadhyay; Hiranmoy Bhattacharjee
Journal:  Mol Microbiol       Date:  2008-10-22       Impact factor: 3.501

10.  Structure-function analysis of MurJ reveals a solvent-exposed cavity containing residues essential for peptidoglycan biogenesis in Escherichia coli.

Authors:  Emily K Butler; Rebecca M Davis; Vase Bari; Paul A Nicholson; Natividad Ruiz
Journal:  J Bacteriol       Date:  2013-08-09       Impact factor: 3.490
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