Literature DB >> 11159319

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.

P Kersey1, H Hermjakob, R Apweiler.   

Abstract

UNLABELLED: The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches. AVAILABILITY: The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files. CONTACT: pkersey@ebi.ac.uk

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Year:  2000        PMID： 11159319     DOI： 10.1093/bioinformatics/16.11.1048

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  19 in total

1.  UniProt: the Universal Protein knowledgebase.

Authors:  Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Plant protein annotation in the UniProt Knowledgebase.

Authors:  Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
Journal:  Plant Physiol       Date:  2005-05       Impact factor: 8.340

4.  Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.

Authors:  Alain Dedieu; Jean-Charles Gaillard; Thierry Pourcher; Elisabeth Darrouzet; Jean Armengaud
Journal:  J Biol Chem       Date:  2010-10-26       Impact factor: 5.157

5.  The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.

Authors:  Kim D Pruitt; Jennifer Harrow; Rachel A Harte; Craig Wallin; Mark Diekhans; Donna R Maglott; Steve Searle; Catherine M Farrell; Jane E Loveland; Barbara J Ruef; Elizabeth Hart; Marie-Marthe Suner; Melissa J Landrum; Bronwen Aken; Sarah Ayling; Robert Baertsch; Julio Fernandez-Banet; Joshua L Cherry; Val Curwen; Michael Dicuccio; Manolis Kellis; Jennifer Lee; Michael F Lin; Michael Schuster; Andrew Shkeda; Clara Amid; Garth Brown; Oksana Dukhanina; Adam Frankish; Jennifer Hart; Bonnie L Maidak; Jonathan Mudge; Michael R Murphy; Terence Murphy; Jeena Rajan; Bhanu Rajput; Lillian D Riddick; Catherine Snow; Charles Steward; David Webb; Janet A Weber; Laurens Wilming; Wenyu Wu; Ewan Birney; David Haussler; Tim Hubbard; James Ostell; Richard Durbin; David Lipman
Journal:  Genome Res       Date:  2009-06-04       Impact factor: 9.043

6.  LZTR1 is a regulator of RAS ubiquitination and signaling.

Authors:  Johannes W Bigenzahn; Giovanna M Collu; Felix Kartnig; Melanie Pieraks; Gregory I Vladimer; Leonhard X Heinz; Vitaly Sedlyarov; Fiorella Schischlik; Astrid Fauster; Manuele Rebsamen; Katja Parapatics; Vincent A Blomen; André C Müller; Georg E Winter; Robert Kralovics; Thijn R Brummelkamp; Marek Mlodzik; Giulio Superti-Furga
Journal:  Science       Date:  2018-11-15       Impact factor: 47.728

7.  Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria.

Authors:  Rita Casadio; Piero Fariselli; Giacomo Finocchiaro; Pier Luigi Martelli
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

Review 8.  The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes.

Authors:  Silvia Braconi Quintaje; Sandra Orchard
Journal:  Mol Cell Proteomics       Date:  2008-04-24       Impact factor: 5.911

9.  The Universal Protein Resource (UniProt).

Authors:  Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Authors:  Richard G Côté; Philip Jones; Lennart Martens; Samuel Kerrien; Florian Reisinger; Quan Lin; Rasko Leinonen; Rolf Apweiler; Henning Hermjakob
Journal:  BMC Bioinformatics       Date:  2007-10-18       Impact factor: 3.169
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