Literature DB >> 11159317

Circles: automating the comparative analysis of RNA secondary structure.

R D Page1.   

Abstract

UNLABELLED: Circles is a program for inferring RNA secondary structure using maximum weight matching. The program can read in an alignment in FASTA, ClustalW, or NEXUS format, compute a maximum weight matching, and export one or more secondary structures in various file formats. AVAILABILITY: The program is available at no cost from http://taxonomy.zoology.gla.ac.uk/rod/circles/ and requires Windows 95/98/NT. CONTACT: r.page@bio.gla.ac.uk

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Year:  2000        PMID: 11159317     DOI: 10.1093/bioinformatics/16.11.1042

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  Diversity of Streptomyces spp. in Eastern Himalayan region - computational RNomics approach to phylogeny.

Authors:  Kaushik Bhattacharjee; Subhro Banerjee; Santa Ram Joshi
Journal:  Bioinformation       Date:  2012-06-28

2.  The Nucleic Acid Database: new features and capabilities.

Authors:  Buvaneswari Coimbatore Narayanan; John Westbrook; Saheli Ghosh; Anton I Petrov; Blake Sweeney; Craig L Zirbel; Neocles B Leontis; Helen M Berman
Journal:  Nucleic Acids Res       Date:  2013-10-31       Impact factor: 16.971

  2 in total

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