Literature DB >> 11157759

Splicing and 3' end formation in the definition of nonsense-mediated decay-competent human beta-globin mRNPs.

G Neu-Yilik1, N H Gehring, R Thermann, U Frede, M W Hentze, A E Kulozik.   

Abstract

Premature translation termination codons are common causes of genetic disorders. mRNAs with such mutations are degraded by a surveillance mechanism termed nonsense-mediated decay (NMD), which represents a phylogenetically widely conserved post-transcriptional mechanism for the quality control of gene expression. How NMD-competent mRNPs are formed and specified remains a central question. Here, we have used human beta-globin mRNA as a model system to address the role of splicing and polyadenylation for human NMD. We show that (i) splicing is an indispensable component of the human beta-globin NMD pathway, which cannot be compensated for by exonic beta-globin 'failsafe' sequences; (ii) the spatial requirements of human beta-globin NMD, as signified by the maximal distance of the nonsense mutation to the final exon-exon junction, are less constrained than in yeast; and (iii) non-polyadenylated mRNAs with a histone 3' end are NMD competent. Thus, the formation of NMD-competent mRNP particles critically depends on splicing but does not require the presence of a poly(A) tail.

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Year:  2001        PMID: 11157759      PMCID: PMC133467          DOI: 10.1093/emboj/20.3.532

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  52 in total

1.  Aberrant mRNAs with extended 3' UTRs are substrates for rapid degradation by mRNA surveillance.

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Journal:  RNA       Date:  1999-10       Impact factor: 4.942

Review 2.  mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription.

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Journal:  Curr Opin Cell Biol       Date:  1999-06       Impact factor: 8.382

3.  The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein.

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Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

Review 4.  Site-directed mutagenesis using a uracil-containing phagemid template.

Authors:  C Hagemeier
Journal:  Methods Mol Biol       Date:  1996

5.  smg-7 is required for mRNA surveillance in Caenorhabditis elegans.

Authors:  B M Cali; S L Kuchma; J Latham; P Anderson
Journal:  Genetics       Date:  1999-02       Impact factor: 4.562

6.  Introns in histone genes alter the distribution of 3' ends.

Authors:  N B Pandey; N Chodchoy; T J Liu; W F Marzluff
Journal:  Nucleic Acids Res       Date:  1990-06-11       Impact factor: 16.971

7.  Gel electrophoretic isolation of splicing complexes containing U1 small nuclear ribonucleoprotein particles.

Authors:  M Zillmann; M L Zapp; S M Berget
Journal:  Mol Cell Biol       Date:  1988-02       Impact factor: 4.272

8.  Polysome-associated mRNAs are substrates for the nonsense-mediated mRNA decay pathway in Saccharomyces cerevisiae.

Authors:  S Zhang; E M Welch; K Hogan; A H Brown; S W Peltz; A Jacobson
Journal:  RNA       Date:  1997-03       Impact factor: 4.942

9.  At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation.

Authors:  J Zhang; X Sun; Y Qian; J P LaDuca; L E Maquat
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

10.  Mammalian orthologues of a yeast regulator of nonsense transcript stability.

Authors:  H A Perlick; S M Medghalchi; F A Spencer; R J Kendzior; H C Dietz
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

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  30 in total

1.  The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.

Authors:  H Le Hir; D Gatfield; E Izaurralde; M J Moore
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

2.  Rapid deadenylation triggered by a nonsense codon precedes decay of the RNA body in a mammalian cytoplasmic nonsense-mediated decay pathway.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Mol Cell Biol       Date:  2003-07       Impact factor: 4.272

3.  Turnover of primary transcripts is a major step in the regulation of mouse H19 gene expression.

Authors:  Laura Milligan; Thierry Forné; Etienne Antoine; Michaël Weber; Bénédicte Hémonnot; Luisa Dandolo; Claude Brunel; Guy Cathala
Journal:  EMBO Rep       Date:  2002-07-15       Impact factor: 8.807

Review 4.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

5.  Nonsense-associated alternative splicing of T-cell receptor beta genes: no evidence for frame dependence.

Authors:  Fabio Mohn; Marc Bühler; Oliver Mühlemann
Journal:  RNA       Date:  2004-12-21       Impact factor: 4.942

6.  Internal ribosome entry sequence-mediated translation initiation triggers nonsense-mediated decay.

Authors:  Jill A Holbrook; Gabriele Neu-Yilik; Niels H Gehring; Andreas E Kulozik; Matthias W Hentze
Journal:  EMBO Rep       Date:  2006-06-16       Impact factor: 8.807

7.  A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.

Authors:  Isabelle Behm-Ansmant; David Gatfield; Jan Rehwinkel; Valérie Hilgers; Elisa Izaurralde
Journal:  EMBO J       Date:  2007-02-22       Impact factor: 11.598

Review 8.  Messenger RNA regulation: to translate or to degrade.

Authors:  Ann-Bin Shyu; Miles F Wilkinson; Ambro van Hoof
Journal:  EMBO J       Date:  2008-02-06       Impact factor: 11.598

9.  Nonsense-mediated mRNA decay (NMD) mechanisms.

Authors:  Saverio Brogna; Jikai Wen
Journal:  Nat Struct Mol Biol       Date:  2009-02       Impact factor: 15.369

10.  Mechanism of escape from nonsense-mediated mRNA decay of human beta-globin transcripts with nonsense mutations in the first exon.

Authors:  Gabriele Neu-Yilik; Beate Amthor; Niels H Gehring; Sharif Bahri; Helena Paidassi; Matthias W Hentze; Andreas E Kulozik
Journal:  RNA       Date:  2011-03-09       Impact factor: 4.942

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