Literature DB >> 11152895

Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae.

B Llorente1, P Durrens, A Malpertuy, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, B Dujon, J de Montigny, A Lépingle, C Neuvéglise, O Ozier-Kalogeropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach, J Souciet, C Gaillardin.   

Abstract

We have evaluated the degree of gene redundancy in the nuclear genomes of 13 hemiascomycetous yeast species. Saccharomyces cerevisiae singletons and gene families appear generally conserved in these species as singletons and families of similar size, respectively. Variations of the number of homologues with respect to that expected affect from 7 to less than 24% of each genome. Since S. cerevisiae homologues represent the majority of the genes identified in the genomes studied, the overall degree of gene redundancy seems conserved across all species. This is best explained by a dynamic equilibrium resulting from numerous events of gene duplication and deletion rather than by a massive duplication event occurring in some lineages and not in others.

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Year:  2000        PMID: 11152895     DOI: 10.1016/s0014-5793(00)02291-2

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  16 in total

1.  Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments.

Authors:  Romain Koszul; Sandrine Caburet; Bernard Dujon; Gilles Fischer
Journal:  EMBO J       Date:  2003-12-18       Impact factor: 11.598

Review 2.  Major transitions in evolution by genome fusions: from prokaryotes to eukaryotes, metazoans, bilaterians and vertebrates.

Authors:  Jürg Spring
Journal:  J Struct Funct Genomics       Date:  2003

3.  Genomic evolution of MHC class I region in primates.

Authors:  Kaoru Fukami-Kobayashi; Takashi Shiina; Tatsuya Anzai; Kazumi Sano; Masaaki Yamazaki; Hidetoshi Inoko; Yoshio Tateno
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-20       Impact factor: 11.205

4.  Three copies of the ATP2 gene are arranged in tandem on chromosome X in the yeast Saccharomyces cerevisiae.

Authors:  Masaharu Takeda; Hiroaki Katayama; Takaaki Satoh; Tadashi Mabuchi
Journal:  Curr Genet       Date:  2005-03-18       Impact factor: 3.886

5.  Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts.

Authors:  Cécile Neuvéglise; Horst Feldmann; Elisabeth Bon; Claude Gaillardin; Serge Casaregola
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

6.  Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny.

Authors:  V Leh-Louis; B Wirth; L Despons; S Wain-Hobson; S Potier; J L Souciet
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

7.  Gene order evolution and paleopolyploidy in hemiascomycete yeasts.

Authors:  Simon Wong; Geraldine Butler; Kenneth H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

8.  Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials.

Authors:  Luis Caspeta; Saeed Shoaie; Rasmus Agren; Intawat Nookaew; Jens Nielsen
Journal:  BMC Syst Biol       Date:  2012-04-04

9.  Duplication processes in Saccharomyces cerevisiae haploid strains.

Authors:  Joseph Schacherer; Jacky de Montigny; Anne Welcker; Jean-Luc Souciet; Serge Potier
Journal:  Nucleic Acids Res       Date:  2005-11-03       Impact factor: 16.971

10.  Reconstructing the history of yeast genomes.

Authors:  David Sankoff
Journal:  PLoS Genet       Date:  2009-05-15       Impact factor: 5.917

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