Literature DB >> 11152879

Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited.

G Blandin1, P Durrens, F Tekaia, M Aigle, M Bolotin-Fukuhara, E Bon, S Casarégola, J de Montigny, C Gaillardin, A Lépingle, B Llorente, A Malpertuy, C Neuvéglise, O Ozier-Kalogeropoulos, A Perrin, S Potier, J Souciet, E Talla, C Toffano-Nioche, M Wésolowski-Louvel, C Marck, B Dujon.   

Abstract

Since its completion more than 4 years ago, the sequence of Saccharomyces cerevisiae has been extensively used and studied. The original sequence has received a few corrections, and the identification of genes has been completed, thanks in particular to transcriptome analyses and to specialized studies on introns, tRNA genes, transposons or multigene families. In order to undertake the extensive comparative sequence analysis of this program, we have entirely revisited the S. cerevisiae sequence using the same criteria for all 16 chromosomes and taking into account publicly available annotations for genes and elements that cannot be predicted. Comparison with the other yeast species of this program indicates the existence of 50 novel genes in segments previously considered as 'intergenic' and suggests extensions for 26 of the previously annotated genes.

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Year:  2000        PMID: 11152879     DOI: 10.1016/s0014-5793(00)02275-4

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  25 in total

1.  A question of size: the eukaryotic proteome and the problems in defining it.

Authors:  Paul M Harrison; Anuj Kumar; Ning Lang; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

2.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

3.  Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae.

Authors:  Kenneth James Howe; Caroline M Kane; Manuel Ares
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

4.  Parallel identification of new genes in Saccharomyces cerevisiae.

Authors:  Guy Oshiro; Lisa M Wodicka; Michael P Washburn; John R Yates; David J Lockhart; Elizabeth A Winzeler
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

Review 5.  Charting gene regulatory networks: strategies, challenges and perspectives.

Authors:  Gong-Hong Wei; De-Pei Liu; Chih-Chuan Liang
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

6.  Biochemical and genetic analysis of the yeast proteome with a movable ORF collection.

Authors:  Daniel M Gelperin; Michael A White; Martha L Wilkinson; Yoshiko Kon; Li A Kung; Kevin J Wise; Nelson Lopez-Hoyo; Lixia Jiang; Stacy Piccirillo; Haiyuan Yu; Mark Gerstein; Mark E Dumont; Eric M Phizicky; Michael Snyder; Elizabeth J Grayhack
Journal:  Genes Dev       Date:  2005-12-01       Impact factor: 11.361

7.  Yos1p is a novel subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex.

Authors:  Matthew Heidtman; Catherine Z Chen; Ruth N Collins; Charles Barlowe
Journal:  Mol Biol Cell       Date:  2005-01-19       Impact factor: 4.138

8.  Hundreds of putatively functional small open reading frames in Drosophila.

Authors:  Emmanuel Ladoukakis; Vini Pereira; Emile G Magny; Adam Eyre-Walker; Juan Pablo Couso
Journal:  Genome Biol       Date:  2011-11-25       Impact factor: 13.583

9.  Characterization of a new multigene family encoding isomaltases in the yeast Saccharomyces cerevisiae, the IMA family.

Authors:  Marie-Ange Teste; Jean Marie François; Jean-Luc Parrou
Journal:  J Biol Chem       Date:  2010-06-18       Impact factor: 5.157

10.  Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny.

Authors:  V Leh-Louis; B Wirth; L Despons; S Wain-Hobson; S Potier; J L Souciet
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

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