Literature DB >> 11152876

Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies.

J Souciet1, M Aigle, F Artiguenave, G Blandin, M Bolotin-Fukuhara, E Bon, P Brottier, S Casaregola, J de Montigny, B Dujon, P Durrens, C Gaillardin, A Lépingle, B Llorente, A Malpertuy, C Neuvéglise, O Ozier-Kalogéropoulos, S Potier, W Saurin, F Tekaia, C Toffano-Nioche, M Wésolowski-Louvel, P Wincker, J Weissenbach.   

Abstract

The identification of molecular evolutionary mechanisms in eukaryotes is approached by a comparative genomics study of a homogeneous group of species classified as Hemiascomycetes. This group includes Saccharomyces cerevisiae, the first eukaryotic genome entirely sequenced, back in 1996. A random sequencing analysis has been performed on 13 different species sharing a small genome size and a low frequency of introns. Detailed information is provided in the 20 following papers. Additional tables available on websites describe the ca. 20000 newly identified genes. This wealth of data, so far unique among eukaryotes, allowed us to examine the conservation of chromosome maps, to identify the 'yeast-specific' genes, and to review the distribution of gene families into functional classes. This project conducted by a network of seven French laboratories has been designated 'Génolevures'.

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Year:  2000        PMID: 11152876     DOI: 10.1016/s0014-5793(00)02272-9

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  60 in total

1.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

2.  Screening of high-level 4-hydroxy-2 (or 5)-ethyl-5 (or 2)-methyl-3(2H)-furanone-producing strains from a collection of gene deletion mutants of Saccharomyces cerevisiae.

Authors:  Kenji Uehara; Jun Watanabe; Takeshi Akao; Daisuke Watanabe; Yoshinobu Mogi; Hitoshi Shimoi
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

3.  Coevolution of gene expression among interacting proteins.

Authors:  Hunter B Fraser; Aaron E Hirsh; Dennis P Wall; Michael B Eisen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-02       Impact factor: 11.205

4.  Emergence of species-specific transporters during evolution of the hemiascomycete phylum.

Authors:  Benoît De Hertogh; Frédéric Hancy; André Goffeau; Philippe V Baret
Journal:  Genetics       Date:  2005-08-22       Impact factor: 4.562

5.  The evolution of 5S ribosomal RNA genes linked to the rDNA units of fungal species.

Authors:  Julie Bergeron; Guy Drouin
Journal:  Curr Genet       Date:  2008-08-15       Impact factor: 3.886

6.  MIPS: a database for genomes and protein sequences.

Authors:  H W Mewes; D Frishman; U Güldener; G Mannhaupt; K Mayer; M Mokrejs; B Morgenstern; M Münsterkötter; S Rudd; B Weil
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.

Authors:  Rob W Van Nues; Jeremy D Brown
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

8.  MIPS: analysis and annotation of proteins from whole genomes.

Authors:  H W Mewes; C Amid; R Arnold; D Frishman; U Güldener; G Mannhaupt; M Münsterkötter; P Pagel; N Strack; V Stümpflen; J Warfsmann; A Ruepp
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

9.  Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny.

Authors:  V Leh-Louis; B Wirth; L Despons; S Wain-Hobson; S Potier; J L Souciet
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

10.  Conservation of RNase III processing pathways and specificity in hemiascomycetes.

Authors:  Guillaume Chanfreau
Journal:  Eukaryot Cell       Date:  2003-10
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