Literature DB >> 11152477

Strength of the Calpha H..O hydrogen bond of amino acid residues.

S Scheiner1, T Kar, Y Gu.   

Abstract

Although the peptide C(alpha)H group has historically not been thought to form hydrogen bonds within proteins, ab initio quantum calculations show it to be a potent proton donor. Its binding energy to a water molecule lies in the range between 1.9 and 2.5 kcal/mol for nonpolar and polar amino acids; the hydrogen bond (H-bond) involving the charged lysine residue is even stronger than a conventional OH..O interaction. The preferred H-bond lengths are quite uniform, about 3.32 A. Formation of each interaction results in a downfield shift of the bridging hydrogen's chemical shift and a blue shift in the C(alpha)H stretching frequency, potential diagnostics of the presence of such an H-bond within a protein.

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Year:  2001        PMID: 11152477     DOI: 10.1074/jbc.M010770200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  34 in total

1.  The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.

Authors:  A Senes; I Ubarretxena-Belandia; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

2.  Molecular dynamics simulations of the E1/E2 transmembrane domain of the Semliki Forest virus.

Authors:  Ana Caballero-Herrera; Lennart Nilsson
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

3.  NCI: A server to identify non-canonical interactions in protein structures.

Authors:  M Madan Babu
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

4.  Cooperative NH⋯O and CH⋯O interactions for sulfate encapsulation in a thiophene-based macrocycle.

Authors:  Musabbir A Saeed; Douglas R Powell; Frank R Fronczek; Md Alamgir Hossain
Journal:  Tetrahedron Lett       Date:  2010-08-11       Impact factor: 2.415

5.  Contribution of active site glutamine to rate enhancement in ubiquitin C-terminal hydrolases.

Authors:  David A Boudreaux; Joseph Chaney; Tushar K Maiti; Chittaranjan Das
Journal:  FEBS J       Date:  2012-02-27       Impact factor: 5.542

6.  A structure-based simulation approach for electron paramagnetic resonance spectra using molecular and stochastic dynamics simulations.

Authors:  Christian Beier; Heinz-Jürgen Steinhoff
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

7.  Simple models for extracting mechanical work from the ATP hydrolysis cycle.

Authors:  Jonathan L Eide; Arup K Chakraborty; George F Oster
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

8.  Influence of C-H...O interactions on the structural stability of β-lactamases.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Phys       Date:  2013-06-25       Impact factor: 1.365

9.  Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures.

Authors:  R N V Krishna Deepak; Ramasubbu Sankararamakrishnan
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

10.  A frequent, GxxxG-mediated, transmembrane association motif is optimized for the formation of interhelical Cα-H hydrogen bonds.

Authors:  Benjamin K Mueller; Sabareesh Subramaniam; Alessandro Senes
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-25       Impact factor: 11.205

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