Literature DB >> 11142377

The odyssey of a regulated transcript.

J Vilardell1, P Chartrand, R H Singer, J R Warner.   

Abstract

The transcript of the Saccharomyces cerevisiae gene, RPL30, is subject to regulated splicing and regulated translation, due to a structure that interacts with its own product, ribosomal protein L30. We have followed the fate of the regulated RPL30 transcripts in vivo. Initially, these transcripts abortively enter the splicing pathway, forming an unusually stable association with U1 snRNP. A large proportion of the unspliced molecules, however, are found in the cytoplasm. Most of these are still bound by L30, as only a small fraction are engaged in translation. Eventually, the unspliced RPL30 transcripts escape the grasp of L30, associate with ribosomes, and fall prey to nonsense mediated decay.

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Year:  2000        PMID: 11142377      PMCID: PMC1370047          DOI: 10.1017/s135583820000145x

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  30 in total

1.  Elevated recombination rates in transcriptionally active DNA.

Authors:  B J Thomas; R Rothstein
Journal:  Cell       Date:  1989-02-24       Impact factor: 41.582

2.  Isolation and characterization of pre-mRNA splicing mutants of Saccharomyces cerevisiae.

Authors:  U Vijayraghavan; M Company; J Abelson
Journal:  Genes Dev       Date:  1989-08       Impact factor: 11.361

3.  Autogenous regulation of splicing of the transcript of a yeast ribosomal protein gene.

Authors:  M D Dabeva; M A Post-Beittenmiller; J R Warner
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

4.  The yeast ribosomal protein L32 and its gene.

Authors:  M D Dabeva; J R Warner
Journal:  J Biol Chem       Date:  1987-11-25       Impact factor: 5.157

5.  Structural basis for the regulation of splicing of a yeast messenger RNA.

Authors:  F J Eng; J R Warner
Journal:  Cell       Date:  1991-05-31       Impact factor: 41.582

6.  A novel cloning strategy reveals the gene for the yeast homologue to Escherichia coli ribosomal protein S12.

Authors:  L E Alksne; J R Warner
Journal:  J Biol Chem       Date:  1993-05-25       Impact factor: 5.157

7.  Identification and functional analysis of the nuclear localization signals of ribosomal protein L25 from Saccharomyces cerevisiae.

Authors:  P J Schaap; J van't Riet; C L Woldringh; H A Raué
Journal:  J Mol Biol       Date:  1991-09-05       Impact factor: 5.469

8.  Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant.

Authors:  F He; S W Peltz; J L Donahue; M Rosbash; A Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

9.  Some cis- and trans-acting mutants for splicing target pre-mRNA to the cytoplasm.

Authors:  P Legrain; M Rosbash
Journal:  Cell       Date:  1989-05-19       Impact factor: 41.582

10.  Characterization of nuclear localizing sequences derived from yeast ribosomal protein L29.

Authors:  M R Underwood; H M Fried
Journal:  EMBO J       Date:  1990-01       Impact factor: 11.598

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  32 in total

1.  Nonsense-mediated decay does not occur within the yeast nucleus.

Authors:  Nicolas Kuperwasser; Saverio Brogna; Ken Dower; Michael Rosbash
Journal:  RNA       Date:  2004-12       Impact factor: 4.942

2.  Ribosomal Protein S12e Has a Distinct Function in Cell Competition.

Authors:  Abhijit Kale; Zhejun Ji; Marianthi Kiparaki; Jorge Blanco; Gerard Rimesso; Stephane Flibotte; Nicholas E Baker
Journal:  Dev Cell       Date:  2018-01-08       Impact factor: 12.270

3.  Drosophila ribosomal proteins are associated with linker histone H1 and suppress gene transcription.

Authors:  Jian-Quan Ni; Lu-Ping Liu; Daniel Hess; Jens Rietdorf; Fang-Lin Sun
Journal:  Genes Dev       Date:  2006-06-30       Impact factor: 11.361

Review 4.  Selenoproteins: molecular pathways and physiological roles.

Authors:  Vyacheslav M Labunskyy; Dolph L Hatfield; Vadim N Gladyshev
Journal:  Physiol Rev       Date:  2014-07       Impact factor: 37.312

5.  Constant splice-isoform ratios in human lymphoblastoid cells support the concept of a splico-stat.

Authors:  Marcel Kramer; Klaus Huse; Uwe Menzel; Oliver Backhaus; Philip Rosenstiel; Stefan Schreiber; Jochen Hampe; Matthias Platzer
Journal:  Genetics       Date:  2011-01-10       Impact factor: 4.562

6.  A subset of Mer1p-dependent introns requires Bud13p for splicing activation and nuclear retention.

Authors:  Frederick W Scherrer; Marc Spingola
Journal:  RNA       Date:  2006-05-31       Impact factor: 4.942

7.  Alternative splicing acting as a bridge in evolution.

Authors:  Kemin Zhou; Asaf Salamov; Alan Kuo; Andrea L Aerts; Xiangyang Kong; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2015-10-30

8.  Deletion of many yeast introns reveals a minority of genes that require splicing for function.

Authors:  Julie Parenteau; Mathieu Durand; Steeve Véronneau; Andrée-Anne Lacombe; Geneviève Morin; Valérie Guérin; Bojana Cecez; Julien Gervais-Bird; Chu-Shin Koh; David Brunelle; Raymund J Wellinger; Benoit Chabot; Sherif Abou Elela
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

9.  Degradation of YRA1 Pre-mRNA in the cytoplasm requires translational repression, multiple modular intronic elements, Edc3p, and Mex67p.

Authors:  Shuyun Dong; Allan Jacobson; Feng He
Journal:  PLoS Biol       Date:  2010-04-27       Impact factor: 8.029

10.  A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs.

Authors:  Ming C Hammond; Andreas Wachter; Ronald R Breaker
Journal:  Nat Struct Mol Biol       Date:  2009-04-19       Impact factor: 15.369

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