Literature DB >> 11133479

Genetic and molecular organization of the alkylbenzene catabolism operon in the psychrotrophic strain Pseudomonas putida 01G3.

P A Chablain1, A L Zgoda, C O Sarde, N Truffaut.   

Abstract

The 11-kb sequence encompassing the alkylbenzene upper pathway in Pseudomonas putida 01G3, a psychrotrophic strain able to degrade alkylbenzenes at low temperatures, was characterized. Together with a potential regulator (EbdR), six putative enzymes (EbdAaAbAcAdBC) were identified, and they exhibited highly significant similarities with enzymes implicated in the equivalent pathway in P. putida RE204. ebd genes appeared to be preferentially induced by ethylbenzene. Multiple-alignment data and growth rate measurements led us to classify 01G3 and closely related strains in two groups with distinct substrate specificities. Close to identified genes, remnants of IS5-like elements provided insight into the evolution of catabolic sequences through rearrangements from a less complex ancestral cluster.

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Year:  2001        PMID： 11133479      PMCID： PMC92599          DOI： 10.1128/AEM.67.1.453-458.2001

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  22 in total

Review 1.  The electron-transport proteins of hydroxylating bacterial dioxygenases.

Authors:  J R Mason; R Cammack
Journal:  Annu Rev Microbiol       Date:  1992       Impact factor: 15.500

2.  Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707.

Authors:  K Taira; J Hirose; S Hayashida; K Furukawa
Journal:  J Biol Chem       Date:  1992-03-05       Impact factor: 5.157

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Authors:  R G Brennan; B W Matthews
Journal:  J Biol Chem       Date:  1989-02-05       Impact factor: 5.157

4.  Use of a xylE marker gene to monitor survival of recombinant Pseudomonas putida populations in lake water by culture on nonselective media.

Authors:  C Winstanley; J A Morgan; R W Pickup; J R Saunders
Journal:  Appl Environ Microbiol       Date:  1991-07       Impact factor: 4.792

5.  Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria.

Authors:  V de Lorenzo; M Herrero; U Jakubzik; K N Timmis
Journal:  J Bacteriol       Date:  1990-11       Impact factor: 3.490

6.  Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli.

Authors:  G J Zylstra; D T Gibson
Journal:  J Biol Chem       Date:  1989-09-05       Impact factor: 5.157

7.  Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.

Authors:  R Bosch; E García-Valdés; E R Moore
Journal:  Gene       Date:  1999-08-05       Impact factor: 3.688

8.  Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10.

Authors:  R Bosch; E García-Valdés; E R Moore
Journal:  Gene       Date:  2000-03-07       Impact factor: 3.688

9.  Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400.

Authors:  B D Erickson; F J Mondello
Journal:  J Bacteriol       Date:  1992-05       Impact factor: 3.490

10.  Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas putida RE204.

Authors:  R W Eaton; K N Timmis
Journal:  J Bacteriol       Date:  1986-10       Impact factor: 3.490
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  4 in total

1.  Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases.

Authors:  Robert Witzig; Howard Junca; Hans-Jürgen Hecht; Dietmar H Pieper
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

2.  Isolation and Characterization a Novel Catabolic Gene Cluster Involved in Chlorobenzene Degradation in Haloalkaliphilic Alcanivorax sp. HA03.

Authors:  Mousa A Alghuthaymi; Ahmed M Awad; Hamdy A Hassan
Journal:  Biology (Basel)       Date:  2022-05-09

3.  Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation.

Authors:  Maria V Brennerova; Jirina Josefiova; Vladimir Brenner; Dietmar H Pieper; Howard Junca
Journal:  Environ Microbiol       Date:  2009-02-19       Impact factor: 5.491

4.  Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.

Authors:  Pratick Khara; Madhumita Roy; Joydeep Chakraborty; Debajyoti Ghosal; Tapan K Dutta
Journal:  FEBS Open Bio       Date:  2014-03-07       Impact factor: 2.693
  4 in total

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