Literature DB >> 11133277

MUSIC, selective pulses, and tuned delays: amino acid type-selective (1)H-(15)N correlations, II.

M Schubert1, H Oschkinat, P Schmieder.   

Abstract

Amino acid type-selective experiments help to remove ambiguities in either manual or automated assignment procedures. Here we present modified triple-resonance experiments that yield amino acid type-selective (1)H-(15)N correlations. They are based on the MUSIC coherence transfer scheme which replaces the initial INEPT transfer and is selective for XH(2) or XH(3) (where X is either (15)N or (13)C). Signals of the desired amino acid types are thus selected based on the topology of the side chain. MUSIC is combined with selective pulses and carefully tuned delays to create experiments for Ser (S-HSQC); Val, Ile, and Ala (VIA-HSQC); Leu and Ala (LA-HSQC); Asp, Asn, and Gly (DNG-HSQC), as well as Glu, Gln, and Gly (EQG-HSQC). The new experiments are recorded as two-dimensional spectra and their performance is demonstrated by their application to two protein domains of 83 and 115 residues. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11133277     DOI: 10.1006/jmre.2000.2222

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  27 in total

1.  Efficient identification of amino acid types for fast protein backbone assignments.

Authors:  H D Ou; H C Lai; Z Serber; V Dötsch
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

2.  Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments.

Authors:  Carolyn M Slupsky; Robert F Boyko; Valerie K Booth; Brian D Sykes
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

3.  Data requirements for reliable chemical shift assignments in deuterated proteins.

Authors:  T Kevin Hitchens; Scott A McCallum; Gordon S Rule
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

4.  IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

Authors:  Sven G Hyberts; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

5.  A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments.

Authors:  Mario Schubert; Dirk Labudde; Dietmar Leitner; Hartmut Oschkinat; Peter Schmieder
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

6.  CASA: an efficient automated assignment of protein mainchain NMR data using an ordered tree search algorithm.

Authors:  Jianyong Wang; Tianzhi Wang; Erik R P Zuiderweg; Gordon M Crippen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

7.  PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.

Authors:  Yizhuang Xu; Xiaoxia Wang; Jun Yang; Julia Vaynberg; Jun Qin
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

8.  Amino-acid type identification in 15N-HSQC spectra by combinatorial selective 15N-labelling.

Authors:  Peter S C Wu; Kiyoshi Ozawa; Slobodan Jergic; Xun-Cheng Su; Nicholas E Dixon; Gottfried Otting
Journal:  J Biomol NMR       Date:  2006-01       Impact factor: 2.835

9.  Thermal stability of chicken brain α-spectrin repeat 17: a spectroscopic study.

Authors:  Annette K Brenner; Bruno Kieffer; Gilles Travé; Nils Age Frøystein; Arnt J Raae
Journal:  J Biomol NMR       Date:  2012-05-09       Impact factor: 2.835

10.  Resonance assignment for a particularly challenging protein based on systematic unlabeling of amino acids to complement incomplete NMR data sets.

Authors:  Peter Bellstedt; Thomas Seiboth; Sabine Häfner; Henriette Kutscha; Ramadurai Ramachandran; Matthias Görlach
Journal:  J Biomol NMR       Date:  2013-08-14       Impact factor: 2.835

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