Literature DB >> 11130713

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

M Salanoubat1, K Lemcke, M Rieger, W Ansorge, M Unseld, B Fartmann, G Valle, H Blöcker, M Perez-Alonso, B Obermaier, M Delseny, M Boutry, L A Grivell, R Mache, P Puigdomènech, V De Simone, N Choisne, F Artiguenave, C Robert, P Brottier, P Wincker, L Cattolico, J Weissenbach, W Saurin, F Quétier, M Schäfer, S Müller-Auer, C Gabel, M Fuchs, V Benes, E Wurmbach, H Drzonek, H Erfle, N Jordan, S Bangert, R Wiedelmann, H Kranz, H Voss, R Holland, P Brandt, G Nyakatura, A Vezzi, M D'Angelo, A Pallavicini, S Toppo, B Simionati, A Conrad, K Hornischer, G Kauer, T H Löhnert, G Nordsiek, J Reichelt, M Scharfe, O Schön, M Bargues, J Terol, J Climent, P Navarro, C Collado, A Perez-Perez, B Ottenwälder, D Duchemin, R Cooke, M Laudie, C Berger-Llauro, B Purnelle, D Masuy, M de Haan, A C Maarse, J P Alcaraz, A Cottet, E Casacuberta, A Monfort, A Argiriou, M flores, R Liguori, D Vitale, G Mannhaupt, D Haase, H Schoof, S Rudd, P Zaccaria, H W Mewes, K F Mayer, S Kaul, C D Town, H L Koo, L J Tallon, J Jenkins, T Rooney, M Rizzo, A Walts, T Utterback, C Y Fujii, T P Shea, T H Creasy, B Haas, R Maiti, D Wu, J Peterson, S Van Aken, G Pai, J Militscher, P Sellers, J E Gill, T V Feldblyum, D Preuss, X Lin, W C Nierman, S L Salzberg, O White, J C Venter, C M Fraser, T Kaneko, Y Nakamura, S Sato, T Kato, E Asamizu, S Sasamoto, T Kimura, K Idesawa, K Kawashima, Y Kishida, C Kiyokawa, M Kohara, M Matsumoto, A Matsuno, A Muraki, S Nakayama, N Nakazaki, S Shinpo, C Takeuchi, T Wada, A Watanabe, M Yamada, M Yasuda, S Tabata.   

Abstract

Arabidopsis thaliana is an important model system for plant biologists. In 1996 an international collaboration (the Arabidopsis Genome Initiative) was formed to sequence the whole genome of Arabidopsis and in 1999 the sequence of the first two chromosomes was reported. The sequence of the last three chromosomes and an analysis of the whole genome are reported in this issue. Here we present the sequence of chromosome 3, organized into four sequence segments (contigs). The two largest (13.5 and 9.2 Mb) correspond to the top (long) and the bottom (short) arms of chromosome 3, and the two small contigs are located in the genetically defined centromere. This chromosome encodes 5,220 of the roughly 25,500 predicted protein-coding genes in the genome. About 20% of the predicted proteins have significant homology to proteins in eukaryotic genomes for which the complete sequence is available, pointing to important conserved cellular functions among eukaryotes.

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Year:  2000        PMID: 11130713     DOI: 10.1038/35048706

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  49 in total

1.  Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.

Authors:  Yong-Li Xiao; Mukesh Malik; Catherine A Whitelaw; Christopher D Town
Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

2.  The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.

Authors:  Cédric Muller; Mathieu Denis; Laurent Gentzbittel; Thomas Faraut
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene.

Authors:  Yoshihisa Yano; Rintaro Saito; Noriyuki Yoshida; Atsushi Yoshiki; Anthony Wynshaw-Boris; Masaru Tomita; Shinji Hirotsune
Journal:  J Mol Med (Berl)       Date:  2004-05-18       Impact factor: 4.599

4.  Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.

Authors:  Vanina Castelli; Jean-Marc Aury; Olivier Jaillon; Patrick Wincker; Christian Clepet; Manuella Menard; Corinne Cruaud; Francis Quétier; Claude Scarpelli; Vincent Schächter; Gary Temple; Michel Caboche; Jean Weissenbach; Marcel Salanoubat
Journal:  Genome Res       Date:  2004-03       Impact factor: 9.043

5.  Transcriptional regulation: a genomic overview.

Authors:  José Luis Riechmann
Journal:  Arabidopsis Book       Date:  2002-04-04

6.  The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.

Authors:  Andreas Ruepp; Alfred Zollner; Dieter Maier; Kaj Albermann; Jean Hani; Martin Mokrejs; Igor Tetko; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; H Werner Mewes
Journal:  Nucleic Acids Res       Date:  2004-10-14       Impact factor: 16.971

7.  Genome-wide expression profiling and identification of gene activities during early flower development in Arabidopsis.

Authors:  Xiaohong Zhang; Baomin Feng; Qing Zhang; Diya Zhang; Naomi Altman; Hong Ma
Journal:  Plant Mol Biol       Date:  2005-06       Impact factor: 4.076

8.  Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

Authors:  Michael D Bennett; Ilia J Leitch; H James Price; J Spencer Johnston
Journal:  Ann Bot       Date:  2003-04       Impact factor: 4.357

9.  Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Authors:  Alain Lecharny; Nathalie Boudet; Isabelle Gy; Sébastien Aubourg; Martin Kreis
Journal:  J Struct Funct Genomics       Date:  2003

10.  Functional genomics by integrated analysis of transcriptome of sweet potato (Ipomoea batatas (L.) Lam.) during root formation.

Authors:  Sujung Kim; Hualin Nie; Byungki Jun; Jiseong Kim; Jeongeun Lee; Seungill Kim; Ekyune Kim; Sunhyung Kim
Journal:  Genes Genomics       Date:  2020-04-02       Impact factor: 1.839

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