Literature DB >> 11125063

PlantsP: a functional genomics database for plant phosphorylation.

M Gribskov1, F Fana, J Harper, D A Hope, A C Harmon, D W Smith, F E Tax, G Zhang.   

Abstract

The PlantsP database is a curated database that combines information derived from sequences with experimental functional genomics information. PlantsP focuses on plant protein kinases and protein phosphatases. The database will specifically provide a resource for information on a collection of T-DNA insertion mutants (knockouts) in each protein kinase and phosphatase in Arabidopsis thaliana. PlantsP also provides a curated view of each protein that includes a comprehensive annotation of functionally related sequence motifs, sequence family definitions, alignments and phylogenetic trees, and descriptive information drawn directly from the literature. PlantsP is available at http://PlantsP.sdsc.edu.

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Year:  2001        PMID: 11125063      PMCID: PMC29854          DOI: 10.1093/nar/29.1.111

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  2 in total

Review 1.  T-DNA as an insertional mutagen in Arabidopsis.

Authors:  P J Krysan; J C Young; M R Sussman
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

  2 in total
  24 in total

1.  The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis.

Authors:  David Kerk; Joshua Bulgrien; Douglas W Smith; Brooke Barsam; Stella Veretnik; Michael Gribskov
Journal:  Plant Physiol       Date:  2002-06       Impact factor: 8.340

2.  MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Authors:  Hiren J Joshi; Matthias Hirsch-Hoffmann; Katja Baerenfaller; Wilhelm Gruissem; Sacha Baginsky; Robert Schmidt; Waltraud X Schulze; Qi Sun; Klaas J van Wijk; Volker Egelhofer; Stefanie Wienkoop; Wolfram Weckwerth; Christophe Bruley; Norbert Rolland; Tetsuro Toyoda; Hirofumi Nakagami; Alexandra M Jones; Steven P Briggs; Ian Castleden; Sandra K Tanz; A Harvey Millar; Joshua L Heazlewood
Journal:  Plant Physiol       Date:  2010-11-12       Impact factor: 8.340

3.  A functional genomic analysis of Arabidopsis thaliana PP2C clade D.

Authors:  Alejandro Tovar-Mendez; Ján A Miernyk; Elizabeth Hoyos; Douglas D Randall
Journal:  Protoplasma       Date:  2013-07-07       Impact factor: 3.356

4.  Computational methods and opportunities for phosphorylation network medicine.

Authors:  Yian Ann Chen; Steven A Eschrich
Journal:  Transl Cancer Res       Date:  2014-06-01       Impact factor: 1.241

5.  Protein N-acylation overrides differing targeting signals.

Authors:  Simon Stael; Roman G Bayer; Norbert Mehlmer; Markus Teige
Journal:  FEBS Lett       Date:  2011-01-08       Impact factor: 4.124

6.  Arabidopsis proteins containing similarity to the universal stress protein domain of bacteria.

Authors:  David Kerk; Joshua Bulgrien; Douglas W Smith; Michael Gribskov
Journal:  Plant Physiol       Date:  2003-03       Impact factor: 8.340

7.  Changes in the Common Bean Transcriptome in Response to Secreted and Surface Signal Molecules of Rhizobium etli.

Authors:  Virginia Dalla Via; Candela Narduzzi; Orlando Mario Aguilar; María Eugenia Zanetti; Flavio Antonio Blanco
Journal:  Plant Physiol       Date:  2015-08-17       Impact factor: 8.340

8.  Classification of protein kinases on the basis of both kinase and non-kinase regions.

Authors:  Juliette Martin; Krishanpal Anamika; Narayanaswamy Srinivasan
Journal:  PLoS One       Date:  2010-09-15       Impact factor: 3.240

9.  Systematic trans-genomic comparison of protein kinases between Arabidopsis and Saccharomyces cerevisiae.

Authors:  Degeng Wang; Jeffrey F Harper; Michael Gribskov
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

10.  A novel leucine-rich repeat receptor-like kinase gene in potato, StLRPK1, is involved in response to diverse stresses.

Authors:  Tian Wu; Zhendong Tian; Jun Liu; Conghua Xie
Journal:  Mol Biol Rep       Date:  2009-02-13       Impact factor: 2.316

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