Literature DB >> 11125057

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research.

J Sprague1, E Doerry, S Douglas, M Westerfield.   

Abstract

The Zebrafish Information Network, ZFIN, is a WWW community resource of zebrafish genetic, genomic and developmental research information (http://zfin.org). ZFIN provides an anatomical atlas and dictionary, developmental staging criteria, research methods, pathology information and a link to the ZFIN relational database (http://zfin. org/ZFIN/). The database, built on a relational, object-oriented model, provides integrated information about mutants, genes, genetic markers, mapping panels, publications and contact information for the zebrafish research community. The database is populated with curated published data, user submitted data and large dataset uploads. A broad range of data types including text, images, graphical representations and genetic maps supports the data. ZFIN incorporates links to other genomic resources that provide sequence and ortholog data. Zebrafish nomenclature guidelines and an automated registration mechanism for new names are provided. Extensive usability testing has resulted in an easy to learn and use forms interface with complex searching capabilities.

Entities:  

Mesh:

Year:  2001        PMID: 11125057      PMCID: PMC29808          DOI: 10.1093/nar/29.1.87

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation.

Authors:  M E Halpern; R K Ho; C Walker; C B Kimmel
Journal:  Cell       Date:  1993-10-08       Impact factor: 41.582

2.  Production of clones of homozygous diploid zebra fish (Brachydanio rerio).

Authors:  G Streisinger; C Walker; N Dower; D Knauber; F Singer
Journal:  Nature       Date:  1981-05-28       Impact factor: 49.962

3.  Gridlock, a localized heritable vascular patterning defect in the zebrafish.

Authors:  B M Weinstein; D L Stemple; W Driever; M C Fishman
Journal:  Nat Med       Date:  1995-11       Impact factor: 53.440

4.  A genetic screen for mutations affecting embryogenesis in zebrafish.

Authors:  W Driever; L Solnica-Krezel; A F Schier; S C Neuhauss; J Malicki; D L Stemple; D Y Stainier; F Zwartkruis; S Abdelilah; Z Rangini; J Belak; C Boggs
Journal:  Development       Date:  1996-12       Impact factor: 6.868

5.  Hematopoietic mutations in the zebrafish.

Authors:  B M Weinstein; A F Schier; S Abdelilah; J Malicki; L Solnica-Krezel; D L Stemple; D Y Stainier; F Zwartkruis; W Driever; M C Fishman
Journal:  Development       Date:  1996-12       Impact factor: 6.868

6.  Characterization of zebrafish mutants with defects in embryonic hematopoiesis.

Authors:  D G Ransom; P Haffter; J Odenthal; A Brownlie; E Vogelsang; R N Kelsh; M Brand; F J van Eeden; M Furutani-Seiki; M Granato; M Hammerschmidt; C P Heisenberg; Y J Jiang; D A Kane; M C Mullins; C Nüsslein-Volhard
Journal:  Development       Date:  1996-12       Impact factor: 6.868

7.  The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.

Authors:  P Haffter; M Granato; M Brand; M C Mullins; M Hammerschmidt; D A Kane; J Odenthal; F J van Eeden; Y J Jiang; C P Heisenberg; R N Kelsh; M Furutani-Seiki; E Vogelsang; D Beuchle; U Schach; C Fabian; C Nüsslein-Volhard
Journal:  Development       Date:  1996-12       Impact factor: 6.868

  7 in total
  42 in total

1.  Wanda: a database of duplicated fish genes.

Authors:  Yves Van de Peer; John S Taylor; Jayabalan Joseph; Axel Meyer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  RTPrimerDB: the real-time PCR primer and probe database.

Authors:  Filip Pattyn; Frank Speleman; Anne De Paepe; Jo Vandesompele
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

Authors:  Olivier Tassy; Delphine Dauga; Fabrice Daian; Daniel Sobral; François Robin; Pierre Khoueiry; David Salgado; Vanessa Fox; Danièle Caillol; Renaud Schiappa; Baptiste Laporte; Anne Rios; Guillaume Luxardi; Takehiro Kusakabe; Jean-Stéphane Joly; Sébastien Darras; Lionel Christiaen; Magali Contensin; Hélène Auger; Clément Lamy; Clare Hudson; Ute Rothbächer; Michael J Gilchrist; Kazuhiro W Makabe; Kohji Hotta; Shigeki Fujiwara; Nori Satoh; Yutaka Satou; Patrick Lemaire
Journal:  Genome Res       Date:  2010-07-20       Impact factor: 9.043

4.  euGenes: a eukaryote genome information system.

Authors:  Donald G Gilbert
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 5.  Genetic and Genomic Advances in Developmental Models: Applications for Nutrition Research.

Authors:  Winyoo Chowanadisai; Matthew D Hart; Morgan D Strong; David M Graham; Robert B Rucker; Brenda J Smith; Carl L Keen; Mark A Messerli
Journal:  Adv Nutr       Date:  2020-07-01       Impact factor: 8.701

6.  Apical polarity protein PrkCi is necessary for maintenance of spinal cord precursors in zebrafish.

Authors:  Randolph K Roberts; Bruce Appel
Journal:  Dev Dyn       Date:  2009-07       Impact factor: 3.780

Review 7.  Zebrafish antipredatory responses: a future for translational research?

Authors:  Robert Gerlai
Journal:  Behav Brain Res       Date:  2009-10-15       Impact factor: 3.332

8.  Xenbase: Core features, data acquisition, and data processing.

Authors:  Christina James-Zorn; Virgillio G Ponferrada; Kevin A Burns; Joshua D Fortriede; Vaneet S Lotay; Yu Liu; J Brad Karpinka; Kamran Karimi; Aaron M Zorn; Peter D Vize
Journal:  Genesis       Date:  2015-07-16       Impact factor: 2.487

9.  The teleost anatomy ontology: anatomical representation for the genomics age.

Authors:  Wasila M Dahdul; John G Lundberg; Peter E Midford; James P Balhoff; Hilmar Lapp; Todd J Vision; Melissa A Haendel; Monte Westerfield; Paula M Mabee
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

10.  Early embryonic androgen exposure induces transgenerational epigenetic and metabolic changes.

Authors:  Ning Xu; Angela K Chua; Hong Jiang; Ning-Ai Liu; Mark O Goodarzi
Journal:  Mol Endocrinol       Date:  2014-07-03
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