Literature DB >> 11118218

Escherichia coli RNA polymerase core and holoenzyme structures.

R D Finn1, E V Orlova, B Gowen, M Buck, M van Heel.   

Abstract

Multisubunit RNA polymerase is an essential enzyme for regulated gene expression. Here we report two Escherichia coli RNA polymerase structures: an 11.0 A structure of the core RNA polymerase and a 9.5 A structure of the sigma(70) holoenzyme. Both structures were obtained by cryo-electron microscopy and angular reconstitution. Core RNA polymerase exists in an open conformation. Extensive conformational changes occur between the core and the holoenzyme forms of the RNA polymerase, which are largely associated with movements in ss'. All common RNA polymerase subunits (alpha(2), ss, ss') could be localized in both structures, thus suggesting the position of sigma(70) in the holoenzyme.

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Year:  2000        PMID: 11118218      PMCID: PMC305883          DOI: 10.1093/emboj/19.24.6833

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  41 in total

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Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
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2.  Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase.

Authors:  N Opalka; R A Mooney; C Richter; K Severinov; R Landick; S A Darst
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

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Journal:  Cell       Date:  1991-06-14       Impact factor: 41.582

4.  DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

Authors:  M L Craig; O V Tsodikov; K L McQuade; P E Schlax; M W Capp; R M Saecker; M T Record
Journal:  J Mol Biol       Date:  1998-11-06       Impact factor: 5.469

5.  Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting.

Authors:  T Heyduk; E Heyduk; K Severinov; H Tang; R H Ebright
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

6.  Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease.

Authors:  J T Owens; R Miyake; K Murakami; A J Chmura; N Fujita; A Ishihama; C F Meares
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain.

Authors:  Y H Jeon; T Yamazaki; T Otomo; A Ishihama; Y Kyogoku
Journal:  J Mol Biol       Date:  1997-04-11       Impact factor: 5.469

Review 8.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

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Journal:  J Electron Microsc Tech       Date:  1988-08

9.  Factor stimulating transcription by RNA polymerase.

Authors:  R R Burgess; A A Travers; J J Dunn; E K Bautz
Journal:  Nature       Date:  1969-01-04       Impact factor: 49.962

10.  Sequences in sigmaN determining holoenzyme formation and properties.

Authors:  M T Gallegos; M Buck
Journal:  J Mol Biol       Date:  1999-05-14       Impact factor: 5.469

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  9 in total

1.  Characterization of monoclonal antibodies against Escherichia coli core RNA polymerase.

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2.  Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy.

Authors:  Oana Coban; Don C Lamb; Evgeny Zaychikov; Hermann Heumann; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

3.  Trapped Ion Mobility Spectrometry of Native Macromolecular Assemblies.

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4.  An AraC/XylS Family Transcriptional Regulator Modulates the Oxidative Stress Response of Francisella tularensis.

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Journal:  J Bacteriol       Date:  2021-09-20       Impact factor: 3.490

5.  Thermal probing of E. coli RNA polymerase off-pathway mechanisms.

Authors:  Yara X Mejia; Hanbin Mao; Nancy R Forde; Carlos Bustamante
Journal:  J Mol Biol       Date:  2008-07-03       Impact factor: 5.469

6.  Direct optical mapping of transcription factor binding sites on field-stretched λ-DNA in nanofluidic devices.

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Journal:  Nucleic Acids Res       Date:  2014-04-21       Impact factor: 16.971

7.  Sigma factors for cyanobacterial transcription.

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Journal:  Gene Regul Syst Bio       Date:  2009-04-22

8.  Structure of RNA polymerase bound to ribosomal 30S subunit.

Authors:  Gabriel Demo; Aviram Rasouly; Nikita Vasilyev; Vladimir Svetlov; Anna B Loveland; Ruben Diaz-Avalos; Nikolaus Grigorieff; Evgeny Nudler; Andrei A Korostelev
Journal:  Elife       Date:  2017-10-13       Impact factor: 8.140

9.  Broadly neutralizing antiviral responses induced by a single-molecule HPV vaccine based on thermostable thioredoxin-L2 multiepitope nanoparticles.

Authors:  Gloria Spagnoli; Somayeh Pouyanfard; Davide Cavazzini; Elena Canali; Stefano Maggi; Massimo Tommasino; Angelo Bolchi; Martin Müller; Simone Ottonello
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  9 in total

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