Literature DB >> 11108709

LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis.

B Haubold1, R R Hudson.   

Abstract

SUMMARY: LIAN is a program to test the null hypothesis of linkage equilibrium for multilocus data. LIAN incorporates both a Monte Carlo method as well as a novel algebraic method to carry out the hypothesis test. The program further returns the genetic diversity of the sample and the pairwise distances between its members.

Entities:  

Mesh：

Year:  2000        PMID： 11108709     DOI： 10.1093/bioinformatics/16.9.847

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  246 in total

1.  Microsatellite characterization of Plasmodium falciparum from cerebral and uncomplicated malaria patients in southern Vietnam.

Authors:  Marcelo U Ferreira; Shalini Nair; Thien Van Hyunh; Fumihiko Kawamoto; Timothy J C Anderson
Journal:  J Clin Microbiol       Date:  2002-05       Impact factor: 5.948

2.  Allelic diversity and recombination in Campylobacter jejuni.

Authors:  S Suerbaum; M Lohrengel; A Sonnevend; F Ruberg; M Kist
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

3.  Influence of seasonality on the genetic diversity of Vibrio parahaemolyticus in New Hampshire shellfish waters as determined by multilocus sequence analysis.

Authors:  Crystal N Ellis; Brian M Schuster; Megan J Striplin; Stephen H Jones; Cheryl A Whistler; Vaughn S Cooper
Journal:  Appl Environ Microbiol       Date:  2012-03-09       Impact factor: 4.792

4.  Decreasing trend of overlapping multilocus sequence types between human and chicken Campylobacter jejuni isolates over a decade in Finland.

Authors:  C P A de Haan; R Kivistö; M Hakkinen; H Rautelin; M L Hänninen
Journal:  Appl Environ Microbiol       Date:  2010-06-11       Impact factor: 4.792

5.  Evolutionary study of a potential selection target region in the pig.

Authors:  A Ojeda; S E Ramos-Onsins; D Marletta; L S Huang; J M Folch; M Pérez-Enciso
Journal:  Heredity (Edinb)       Date:  2010-05-26       Impact factor: 3.821

6.  Lack of Geospatial Population Structure Yet Significant Linkage Disequilibrium in the Reservoir of Plasmodium falciparum in Bongo District, Ghana.

Authors:  Shazia Ruybal-Pesántez; Kathryn E Tiedje; Mary M Rorick; Lucas Amenga-Etego; Anita Ghansah; Abraham R Oduro; Kwadwo A Koram; Karen P Day
Journal:  Am J Trop Med Hyg       Date:  2017-07-19       Impact factor: 2.345

7.  Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana.

Authors:  Erica M Goss; Martin Kreitman; Joy Bergelson
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

8.  Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes.

Authors:  Blanca de Las Rivas; Angela Marcobal; Rosario Muñoz
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

9.  Molecular subtyping and characterization of bovine and human Streptococcus agalactiae isolates.

Authors:  Sharinne Sukhnanand; Belgin Dogan; Maranatha O Ayodele; Ruth N Zadoks; Mary Patricia J Craver; Nellie B Dumas; Ynte H Schukken; Kathryn J Boor; Martin Wiedmann
Journal:  J Clin Microbiol       Date:  2005-03       Impact factor: 5.948

10.  Nucleotide polymorphism and within-gene recombination in Daphnia magna and D. pulex, two cyclical parthenogens.

Authors:  Christoph R Haag; Seanna J McTaggart; Anaïs Didier; Tom J Little; Deborah Charlesworth
Journal:  Genetics       Date:  2009-03-18       Impact factor: 4.562
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