Literature DB >> 11103999

The Protein Data Bank and the challenge of structural genomics.

H M Berman1, T N Bhat, P E Bourne, Z Feng, G Gilliland, H Weissig, J Westbrook.   

Abstract

The PDB has created systems for the processing, exchange, query, and distribution of data that will enable many aspects of high throughput structural genomics.

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Year:  2000        PMID： 11103999     DOI： 10.1038/80734

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


  157 in total

1.  Preferred proline puckerings in cis and trans peptide groups: implications for collagen stability.

Authors:  L Vitagliano; R Berisio; A Mastrangelo; L Mazzarella; A Zagari
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

2.  A comparison of position-specific score matrices based on sequence and structure alignments.

Authors:  Anna R Panchenko; Stephen H Bryant
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

3.  Secure web book to store structural genomics research data.

Authors:  Babu A Manjasetty; Klaus Höppner; Uwe Mueller; Udo Heinemann
Journal:  J Struct Funct Genomics       Date:  2003

4.  Can we separate active from inactive conformations?

Authors:  David J Diller; Kenneth M Merz
Journal:  J Comput Aided Mol Des       Date:  2002-02       Impact factor: 3.686

5.  In search for more accurate alignments in the twilight zone.

Authors:  Lukasz Jaroszewski; Weizhong Li; Adam Godzik
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

6.  The crystal structure of a tetrameric hemoglobin in a partial hemichrome state.

Authors:  Antonio Riccio; Luigi Vitagliano; Guido di Prisco; Adriana Zagari; Lelio Mazzarella
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

7.  RefDB: a database of uniformly referenced protein chemical shifts.

Authors:  Haiyan Zhang; Stephen Neal; David S Wishart
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

8.  SPINE 2: a system for collaborative structural proteomics within a federated database framework.

Authors:  Chern-Sing Goh; Ning Lan; Nathaniel Echols; Shawn M Douglas; Duncan Milburn; Paul Bertone; Rong Xiao; Li-Chung Ma; Deyou Zheng; Zeba Wunderlich; Tom Acton; Gaetano T Montelione; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

9.  The Protein Data Bank and structural genomics.

Authors:  John Westbrook; Zukang Feng; Li Chen; Huanwang Yang; Helen M Berman
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties.

Authors:  Masakazu Sekijima; Chie Motono; Satoshi Yamasaki; Kiyotoshi Kaneko; Yutaka Akiyama
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033
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