Literature DB >> 11103998

Structural genomics of RNA.

J A Doudna1.   

Abstract

A detailed understanding of the functions and interactions of biological macromolecules requires knowledge of their molecular structures. Structural genomics, the systematic determination of all macromolecular structures represented in a genome, is focused at present exclusively on proteins. It is clear, however, that RNA molecules play a variety of significant roles in cells, including protein synthesis and targeting, many forms of RNA processing and splicing, RNA editing and modification, and chromosome end maintenance. To comprehensively understand the biology of a cell, it will ultimately be necessary to know the identity of all encoded RNAs, the molecules with which they interact and the molecular structures of these complexes. This report focuses on the feasibility of structural genomics of RNA, approaches to determining RNA structures and the potential usefulness of an RNA structural database for both predicting folds and deciphering biological functions of RNA molecules.

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Year:  2000        PMID: 11103998     DOI: 10.1038/80729

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  42 in total

1.  Conserved RNA secondary structures in Picornaviridae genomes.

Authors:  C Witwer; S Rauscher; I L Hofacker; P F Stadler
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble.

Authors:  Emily Rogers; Christine E Heitsch
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

3.  Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.

Authors:  Franca Fraternali; Luigi Cavallo
Journal:  Nucleic Acids Res       Date:  2002-07-01       Impact factor: 16.971

4.  Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design.

Authors:  Hin Hark Gan; Samuela Pasquali; Tamar Schlick
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

5.  Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster.

Authors:  Carsten Stuckenholz; Victoria H Meller; Mitzi I Kuroda
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

6.  Microenvironment analysis and identification of magnesium binding sites in RNA.

Authors:  D Rey Banatao; Russ B Altman; Teri E Klein
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

Review 7.  Structures of trinucleotide repeats in human transcripts and their functional implications.

Authors:  Anna Jasinska; Gracjan Michlewski; Mateusz de Mezer; Krzysztof Sobczak; Piotr Kozlowski; Marek Napierala; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

8.  A general method for rapid and nondenaturing purification of RNAs.

Authors:  Jeffrey S Kieft; Robert T Batey
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

9.  An element of the tertiary structure of Peach latent mosaic viroid RNA revealed by UV irradiation.

Authors:  Carmen Hernández; Francesco Di Serio; Silvia Ambrós; José-Antonio Daròs; Ricardo Flores
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

10.  Distributions of beneficial fitness effects in RNA.

Authors:  Matthew C Cowperthwaite; J J Bull; Lauren Ancel Meyers
Journal:  Genetics       Date:  2005-06-08       Impact factor: 4.562

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