Literature DB >> 11102168

Why is the DNA denaturation transition first order?

Y Kafri1, D Mukamel, L Peliti.   

Abstract

We study a model for the denaturation transition of DNA in which the molecules are considered as being composed of a sequence of alternating bound segments and denaturated loops. We take into account the excluded-volume interactions between denaturated loops and the rest of the chain by exploiting recent results on scaling properties of polymer networks of arbitrary topology. The phase transition is found to be first order in d = 2 dimensions and above, in agreement with experiments and at variance with previous theoretical results, in which only excluded-volume interactions within denaturated loops were taken into account. Our results agree with recent numerical simulations.

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Year:  2000        PMID: 11102168     DOI: 10.1103/PhysRevLett.85.4988

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  18 in total

1.  Localization of denaturation bubbles in random DNA sequences.

Authors:  Terence Hwa; Enzo Marinari; Kim Sneppen; Lei-han Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-02       Impact factor: 11.205

2.  Collapse and hybridization of RNA: view from replica technique approach.

Authors:  Y Sh Mamasakhlisov; S Bellucci; Shura Hayryan; H Caturyan; Z Grigoryan; Chin-Kun Hu
Journal:  Eur Phys J E Soft Matter       Date:  2015-09-21       Impact factor: 1.890

3.  Statistical theory of force-induced unzipping of DNA.

Authors:  N Singh; Y Singh
Journal:  Eur Phys J E Soft Matter       Date:  2005-03-18       Impact factor: 1.890

4.  Mismatches and bubbles in DNA.

Authors:  Yan Zeng; Giovanni Zocchi
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

5.  The relevance of nonlinear stacking interactions in simple models of double-stranded DNA.

Authors:  Giuseppe Saccomandi; Ivonne Sgura
Journal:  J R Soc Interface       Date:  2006-10-22       Impact factor: 4.118

6.  There and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching.

Authors:  Stephen Whitelam; Sander Pronk; Phillip L Geissler
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

7.  Dynamics of intramolecular recognition: base-pairing in DNA/RNA near and far from equilibrium.

Authors:  R Bundschuh; U Gerland
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-07       Impact factor: 1.890

8.  A mesoscale model of DNA and its renaturation.

Authors:  E J Sambriski; D C Schwartz; J J de Pablo
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

9.  Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways.

Authors:  E J Sambriski; V Ortiz; J J de Pablo
Journal:  J Phys Condens Matter       Date:  2008-12-17       Impact factor: 2.333

10.  Force-driven separation of short double-stranded DNA.

Authors:  Dominik Ho; Julia L Zimmermann; Florian A Dehmelt; Uta Steinbach; Matthias Erdmann; Philip Severin; Katja Falter; Hermann E Gaub
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

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