Literature DB >> 11099262

gff2ps: visualizing genomic annotations.

J F Abril1, R Guigó.   

Abstract

gff2psis a program for visualizing annotations of genomic sequences. The program takes the annotated features on a genomic sequence in GFF format as input, and produces a visual output in PostScript. While it can be used in a very simple way, it also allows for a great degree of customization through a number of options and/or customization files.

Mesh：

Year:  2000        PMID： 11099262     DOI： 10.1093/bioinformatics/16.8.743

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  23 in total

1.  An assessment of gene prediction accuracy in large DNA sequences.

Authors:  R Guigó; P Agarwal; J F Abril; M Burset; J W Fickett
Journal:  Genome Res       Date:  2000-10       Impact factor: 9.043

2.  In silico identification of novel selenoproteins in the Drosophila melanogaster genome.

Authors:  S Castellano; N Morozova; M Morey; M J Berry; F Serras; M Corominas; R Guigó
Journal:  EMBO Rep       Date:  2001-08       Impact factor: 8.807

3.  Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distribution.

Authors:  Sergi Castellano; Sergey V Novoselov; Gregory V Kryukov; Alain Lescure; Enrique Blanco; Alain Krol; Vadim N Gladyshev; Roderic Guigó
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

4.  AUGUSTUS: a web server for gene finding in eukaryotes.

Authors:  Mario Stanke; Rasmus Steinkamp; Stephan Waack; Burkhard Morgenstern
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  Databases, Knowledgebases, and Software Tools for Virus Informatics.

Authors:  Yuxin Lin; Yulan Qian; Xin Qi; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

6.  The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes.

Authors:  Rosario Gil; Francisco J Silva; Evelyn Zientz; François Delmotte; Fernando González-Candelas; Amparo Latorre; Carolina Rausell; Judith Kamerbeek; Jürgen Gadau; Bert Hölldobler; Roeland C H J van Ham; Roy Gross; Andrés Moya
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-28       Impact factor: 11.205

7.  The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.

Authors:  Allen Kovach; Jill L Wegrzyn; Genis Parra; Carson Holt; George E Bruening; Carol A Loopstra; James Hartigan; Mark Yandell; Charles H Langley; Ian Korf; David B Neale
Journal:  BMC Genomics       Date:  2010-07-07       Impact factor: 3.969

8.  FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.

Authors:  Davide Rambaldi; Francesca D Ciccarelli
Journal:  Bioinformatics       Date:  2009-06-19       Impact factor: 6.937

9.  Centromere sequence and dynamics in Dictyostelium discoideum.

Authors:  Gernot Glöckner; Andrew J Heidel
Journal:  Nucleic Acids Res       Date:  2009-01-29       Impact factor: 16.971

10.  CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes.

Authors:  Enrique Blanco; Montserrat Corominas
Journal:  BMC Genomics       Date:  2012-12-10       Impact factor: 3.969
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