Literature DB >> 11099261

A comparison of signal sequence prediction methods using a test set of signal peptides.

K M Menne1, H Hermjakob, R Apweiler.   

Abstract

We describe the creation of a test set containing secretory and non-secretory proteins. Five existing prediction programs for signal sequences and their cleavage sites are compared on the basis of this test set: SPScan, SigCleave, SignalP V1.1, SignalP V2.0. b2-HMM and SignalP V2.0.b2-NN.

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Year:  2000        PMID： 11099261     DOI： 10.1093/bioinformatics/16.8.741

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  36 in total

1.  Elevated rates of protein secretion, evolution, and disease among tissue-specific genes.

Authors:  Eitan E Winter; Leo Goodstadt; Chris P Ponting
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

2.  Predicting protein cellular localization using a domain projection method.

Authors:  Richard Mott; Jörg Schultz; Peer Bork; Chris P Ponting
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

3.  PrediSi: prediction of signal peptides and their cleavage positions.

Authors:  Karsten Hiller; Andreas Grote; Maurice Scheer; Richard Münch; Dieter Jahn
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Genome-scale expression of proteins from Bacillus subtilis.

Authors:  S Moy; L Dieckman; M Schiffer; N Maltsev; G-X Yu; F R Collart
Journal:  J Struct Funct Genomics       Date:  2004

5.  Signal peptide prediction based on analysis of experimentally verified cleavage sites.

Authors:  Zemin Zhang; William J Henzel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

Review 6.  New methods for researching accessory proteins.

Authors:  Steven M Foord; Simon D Topp; Marco Abramo; Joanna D Holbrook
Journal:  J Mol Neurosci       Date:  2005       Impact factor: 3.444

7.  Computational prediction of human proteins that can be secreted into the bloodstream.

Authors:  Juan Cui; Qi Liu; David Puett; Ying Xu
Journal:  Bioinformatics       Date:  2008-08-12       Impact factor: 6.937

8.  Skeletal muscle signal peptide optimization for enhancing propeptide or cytokine secretion.

Authors:  Manoel Figueiredo Neto; Marxa L Figueiredo
Journal:  J Theor Biol       Date:  2016-08-27       Impact factor: 2.691

9.  EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora.

Authors:  Trudy A Torto; Shuang Li; Allison Styer; Edgar Huitema; Antonino Testa; Neil A R Gow; Pieter van West; Sophien Kamoun
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

10.  Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods.

Authors:  Nils Anders Leversen; Gustavo A de Souza; Hiwa Målen; Swati Prasad; Inge Jonassen; Harald G Wiker
Journal:  Microbiology (Reading)       Date:  2009-04-23       Impact factor: 2.777
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