Literature DB >> 11088545

Conformational statistics of stiff macromolecules as solutions to partial differential equations on the rotation and motion groups

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Abstract

Partial differential equations (PDE's) for the probability density function (PDF) of the position and orientation of the distal end of a stiff macromolecule relative to its proximal end are derived and solved. The Kratky-Porod wormlike chain, the Yamakawa helical wormlike chain, and the original and revised Marko-Siggia models are examples of stiffness models to which the present formulation is applied. The solution technique uses harmonic analysis on the rotation and motion groups to convert PDE's governing the PDF's of interest into linear algebraic equations which have mathematically elegant solutions.

Year:  2000        PMID: 11088545     DOI: 10.1103/physreve.62.880

Source DB:  PubMed          Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics        ISSN: 1063-651X


  11 in total

1.  A Unified Approach to Conformational Statistics of Classical Polymer and Polypeptide Models.

Authors:  Jin Seob Kim; Gregory S Chirikjian
Journal:  Polymer (Guildf)       Date:  2005-11-28       Impact factor: 4.430

2.  The radial distribution function of worm-like chains.

Authors:  N B Becker; A Rosa; R Everaers
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-02       Impact factor: 1.890

Review 3.  Modeling loop entropy.

Authors:  Gregory S Chirikjian
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

4.  Conformational Statistics of Semi-Flexible Macromolecular Chains with Internal Joints.

Authors:  Yu Zhou; Gregory S Chirikjian
Journal:  Macromolecules       Date:  2006-02-11       Impact factor: 5.985

5.  INFORMATION-THEORETIC INEQUALITIES ON UNIMODULAR LIE GROUPS.

Authors:  Gregory S Chirikjian
Journal:  J Geom Mech       Date:  2010-06-01       Impact factor: 0.857

6.  The Stochastic Elastica and Excluded-Volume Perturbations of DNA Conformational Ensembles.

Authors:  Gregory S Chirikjian
Journal:  Int J Non Linear Mech       Date:  2008-12-01       Impact factor: 2.985

7.  Conformational Analysis of Stiff Chiral Polymers with End-Constraints.

Authors:  Jin Seob Kim; Gregory S Chirikjian
Journal:  Mol Simul       Date:  2006       Impact factor: 2.178

Review 8.  Group theory and biomolecular conformation: I. Mathematical and computational models.

Authors:  Gregory S Chirikjian
Journal:  J Phys Condens Matter       Date:  2010-08-18       Impact factor: 2.333

9.  Multiscale modeling of double-helical DNA and RNA: a unification through Lie groups.

Authors:  Kevin C Wolfe; Whitney A Hastings; Samrat Dutta; Andrew Long; Bruce A Shapiro; Thomas B Woolf; Martin Guthold; Gregory S Chirikjian
Journal:  J Phys Chem B       Date:  2012-06-07       Impact factor: 2.991

10.  First-principles calculation of DNA looping in tethered particle experiments.

Authors:  Kevin B Towles; John F Beausang; Hernan G Garcia; Rob Phillips; Philip C Nelson
Journal:  Phys Biol       Date:  2009-07-01       Impact factor: 2.583

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