Literature DB >> 11088017

Compositional bias in DNA.

C Gautier1.   

Abstract

Experimental approaches, as well as computer analysis on genomic sequences, have revealed a large variability in base composition between regions in the same genome or between genomes of different species. In most cases, however, the biological causes of these compositional biases remain unknown. The recent large increase in the availability of completely sequenced genomes can give new insight into evolution processes involved in these compositional biases.

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Year:  2000        PMID: 11088017     DOI: 10.1016/s0959-437x(00)00144-1

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  13 in total

Review 1.  Through a genome, darkly: comparative analysis of plant chromosomal DNA.

Authors:  Graham J King
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Genome rhetoric and the emergence of compositional bias.

Authors:  Kalin Vetsigian; Nigel Goldenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

3.  Informatics for unveiling hidden genome signatures.

Authors:  Takashi Abe; Shigehiko Kanaya; Makoto Kinouchi; Yuta Ichiba; Tokio Kozuki; Toshimichi Ikemura
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

4.  Comparative sequence analysis of the imprinted Dlk1-Gtl2 locus in three mammalian species reveals highly conserved genomic elements and refines comparison with the Igf2-H19 region.

Authors:  M Paulsen; S Takada; N A Youngson; M Benchaib; C Charlier; K Segers; M Georges; A C Ferguson-Smith
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

5.  Mutation exposed: a neutral explanation for extreme base composition of an endosymbiont genome.

Authors:  Jennifer J Wernegreen; Daniel J Funk
Journal:  J Mol Evol       Date:  2004-12       Impact factor: 2.395

6.  Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data.

Authors:  Leslie Regad; Juliette Martin; Gregory Nuel; Anne-Claude Camproux
Journal:  Algorithms Mol Biol       Date:  2010-01-26       Impact factor: 1.405

7.  SHIFT: server for hidden stops analysis in frame-shifted translation.

Authors:  Arun Gupta; Tiratha Raj Singh
Journal:  BMC Res Notes       Date:  2013-02-23

8.  CBDB: the codon bias database.

Authors:  Adam Hilterbrand; Joseph Saelens; Catherine Putonti
Journal:  BMC Bioinformatics       Date:  2012-04-26       Impact factor: 3.169

9.  Deciphering heterogeneity in pig genome assembly Sscrofa9 by isochore and isochore-like region analyses.

Authors:  Wenqian Zhang; Wenwu Wu; Wenchao Lin; Pengfang Zhou; Li Dai; Yang Zhang; Jingfei Huang; Deli Zhang
Journal:  PLoS One       Date:  2010-10-11       Impact factor: 3.240

10.  Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants.

Authors:  Xiaohan Yang; Brian E Scheffler; Leslie A Weston
Journal:  Plant Methods       Date:  2006-03-01       Impact factor: 4.993

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