Literature DB >> 11084910

The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance.

M De Maeyer1, J Desmet, I Lasters.   

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Year:  2000        PMID： 11084910     DOI： 10.1385/1-59259-368-2:265

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


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  11 in total

1.  A graph-theory algorithm for rapid protein side-chain prediction.

Authors:  Adrian A Canutescu; Andrew A Shelenkov; Roland L Dunbrack
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Action-at-a-distance interactions enhance protein binding affinity.

Authors:  Brian A Joughin; David F Green; Bruce Tidor
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

3.  Problems in using statistical analysis of replacement and silent mutations in antibody genes for determining antigen-driven affinity selection.

Authors:  Biplab Bose; Subrata Sinha
Journal:  Immunology       Date:  2005-10       Impact factor: 7.397

4.  An unusual red-edge excitation and time-dependent Stokes shift in the single tryptophan mutant protein DD-carboxypeptidase from Streptomyces: the role of dynamics and tryptophan rotamers.

Authors:  Giovanni Maglia; Abel Jonckheer; Marc De Maeyer; Jean-Marie Frère; Yves Engelborghs
Journal:  Protein Sci       Date:  2007-12-20       Impact factor: 6.725

5.  Rational and computational design of stabilized variants of cyanovirin-N that retain affinity and specificity for glycan ligands.

Authors:  Vadim Patsalo; Daniel P Raleigh; David F Green
Journal:  Biochemistry       Date:  2011-11-16       Impact factor: 3.162

6.  Rational design of new binding specificity by simultaneous mutagenesis of calmodulin and a target peptide.

Authors:  David F Green; Andrew T Dennis; Peter S Fam; Bruce Tidor; Alan Jasanoff
Journal:  Biochemistry       Date:  2006-10-17       Impact factor: 3.162

7.  Tryptophan rotamers as evidenced by X-ray, fluorescence lifetimes, and molecular dynamics modeling.

Authors:  Samuel L C Moors; Mario Hellings; Marc De Maeyer; Yves Engelborghs; Arnout Ceulemans
Journal:  Biophys J       Date:  2006-05-12       Impact factor: 4.033

8.  Development of resistance against diketo derivatives of human immunodeficiency virus type 1 by progressive accumulation of integrase mutations.

Authors:  Valery Fikkert; Bénédicte Van Maele; Jo Vercammen; Anke Hantson; Barbara Van Remoortel; Martine Michiels; Cristina Gurnari; Christophe Pannecouque; Marc De Maeyer; Yves Engelborghs; Erik De Clercq; Zeger Debyser; Myriam Witvrouw
Journal:  J Virol       Date:  2003-11       Impact factor: 5.103

9.  The dead-end elimination method, tryptophan rotamers, and fluorescence lifetimes.

Authors:  Mario Hellings; Marc De Maeyer; Stefan Verheyden; Qiang Hao; Els J M Van Damme; Willy J Peumans; Yves Engelborghs
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

10.  Tryptophan conformations associated with partial unfolding in ribonuclease T1.

Authors:  Samuel L C Moors; Abel Jonckheer; Marc De Maeyer; Yves Engelborghs; Arnout Ceulemans
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033
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