Literature DB >> 11079904

Discovering missed synonymy in a large concept-oriented Metathesaurus.

W T Hole1, S Srinivasan.   

Abstract

The Unified Medical Language System (UMLS) [1, 2] Metathesuarus is concept-oriented; its goal is to unite all names with identical meaning in a single Concept. The names come from its constituent vocabularies or "sources"--a wide variety of biomedical terminologies including many controlled vocabularies and classifications used in patient records, administrative health data, bibliographic, research, full-text, and expert systems. Many offer little definitional information, and many are not themselves concept-oriented, so identifying synonymy is a challenging semantic task [3]. The rapidly increasing size of the Metathesaurus makes the task daunting, demanding effective computational support; there are more than 1.5 million names for 730,000 concepts in the January 2000 release. Vocabularies are added and updated using sophisticated lexical matching, selective algorithms, and expert review [4, 5, 6]. Yet the result is imperfect; we have discovered and corrected missed synonymy in approximately 1% of previously released concepts each year. This paper reviews general methods for finding missed synonymy and describes several specific novel approaches which we have found effective.

Entities:  

Mesh:

Year:  2000        PMID: 11079904      PMCID: PMC2244099     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  3 in total

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Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

2.  Merging terminologies.

Authors:  M S Tuttle; O N Suarez-Munist; N E Olson; D D Sherertz; W D Sperzel; M S Erlbaum; L F Fuller; W T Hole; S J Nelson; W G Cole
Journal:  Medinfo       Date:  1995

3.  Lexical methods for managing variation in biomedical terminologies.

Authors:  A T McCray; S Srinivasan; A C Browne
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994
  3 in total
  20 in total

1.  Mapping between SNOMED RT and Clinical terms version 3: a key component of the SNOMED CT development process.

Authors:  A Y Wang; J W Barrett; T Bentley; D Markwell; C Price; K A Spackman; M Q Stearns
Journal:  Proc AMIA Symp       Date:  2001

2.  Battling Scylla and Charybdis: the search for redundancy and ambiguity in the 2001 UMLS metathesaurus.

Authors:  J J Cimino
Journal:  Proc AMIA Symp       Date:  2001

3.  SNOMED clinical terms: overview of the development process and project status.

Authors:  M Q Stearns; C Price; K A Spackman; A Y Wang
Journal:  Proc AMIA Symp       Date:  2001

4.  A semantic normal form for clinical drugs in the UMLS: early experiences with the VANDF.

Authors:  Stuart J Nelson; Steven H Brown; Mark S Erlbaum; Nels Olson; Tammy Powell; Brian Carlsen; John Carter; Mark S Tuttle; William T Hole
Journal:  Proc AMIA Symp       Date:  2002

5.  IndexFinder: a method of extracting key concepts from clinical texts for indexing.

Authors:  Qinghua Zou; Wesley W Chu; Craig Morioka; Gregory H Leazer; Hooshang Kangarloo
Journal:  AMIA Annu Symp Proc       Date:  2003

6.  The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions.

Authors:  Kin Wah Fung; Clement McDonald; Suresh Srinivasan
Journal:  J Am Med Inform Assoc       Date:  2010 Nov-Dec       Impact factor: 4.497

7.  Integrating SNOMED CT into the UMLS: an exploration of different views of synonymy and quality of editing.

Authors:  Kin Wah Fung; William T Hole; Stuart J Nelson; Suresh Srinivasan; Tammy Powell; Laura Roth
Journal:  J Am Med Inform Assoc       Date:  2005-03-31       Impact factor: 4.497

8.  Auditing as part of the terminology design life cycle.

Authors:  Hua Min; Yehoshua Perl; Yan Chen; Michael Halper; James Geller; Yue Wang
Journal:  J Am Med Inform Assoc       Date:  2006-08-23       Impact factor: 4.497

Review 9.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

10.  Using WordNet synonym substitution to enhance UMLS source integration.

Authors:  Kuo-Chuan Huang; James Geller; Michael Halper; Yehoshua Perl; Junchuan Xu
Journal:  Artif Intell Med       Date:  2008-12-30       Impact factor: 5.326

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