Literature DB >> 11073918

Inducible metabolism of phenolic acids in Pediococcus pentosaceus is encoded by an autoregulated operon which involves a new class of negative transcriptional regulator.

L Barthelmebs1, B Lecomte, C Divies, J F Cavin.   

Abstract

Pediococcus pentosaceus displays a substrate-inducible phenolic acid decarboxylase (PAD) activity on p-coumaric acid. Based on DNA sequence homologies between the three PADs previously cloned, a DNA probe of the Lactobacillus plantarum pdc gene was used to screen a P. pentosaceus genomic library in order to clone the corresponding gene of this bacteria. One clone detected with this probe displayed a low PAD activity. Subcloning of this plasmid insertion allowed us to determine the part of the insert which contains a 534-bp open reading frame (ORF) coding for a 178-amino-acid protein presenting 81.5% of identity with L. plantarum PDC enzyme. This ORF was identified as the padA gene. A second ORF was located just downstream of the padA gene and displayed 37% identity with the product of the Bacillus subtilis yfiO gene. Subcloning, transcriptional analysis, and expression studies with Escherichia coli of these two genes under the padA gene promoter, demonstrated that the genes are organized in an autoregulated bicistronic operonic structure and that the gene located upstream of the padA gene encodes the transcriptional repressor of the padA gene. Transcription of this pad operon in P. pentosaceus is acid phenol dependent.

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Year:  2000        PMID: 11073918      PMCID: PMC111416          DOI: 10.1128/JB.182.23.6724-6731.2000

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  36 in total

Review 1.  Multidrug resistance in enteric and other gram-negative bacteria.

Authors:  A M George
Journal:  FEMS Microbiol Lett       Date:  1996-05-15       Impact factor: 2.742

2.  Molecular characterization of an inducible p-coumaric acid decarboxylase from Lactobacillus plantarum: gene cloning, transcriptional analysis, overexpression in Escherichia coli, purification, and characterization.

Authors:  J F Cavin; L Barthelmebs; C Diviès
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

3.  Regulation of p-hydroxybenzoate hydroxylase synthesis by PobR bound to an operator in Acinetobacter calcoaceticus.

Authors:  A A DiMarco; L N Ornston
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

Review 4.  Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon.

Authors:  A M Osborn; K D Bruce; P Strike; D A Ritchie
Journal:  FEMS Microbiol Rev       Date:  1997-04       Impact factor: 16.408

5.  The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Authors:  F Kunst; N Ogasawara; I Moszer; A M Albertini; G Alloni; V Azevedo; M G Bertero; P Bessières; A Bolotin; S Borchert; R Borriss; L Boursier; A Brans; M Braun; S C Brignell; S Bron; S Brouillet; C V Bruschi; B Caldwell; V Capuano; N M Carter; S K Choi; J J Cordani; I F Connerton; N J Cummings; R A Daniel; F Denziot; K M Devine; A Düsterhöft; S D Ehrlich; P T Emmerson; K D Entian; J Errington; C Fabret; E Ferrari; D Foulger; C Fritz; M Fujita; Y Fujita; S Fuma; A Galizzi; N Galleron; S Y Ghim; P Glaser; A Goffeau; E J Golightly; G Grandi; G Guiseppi; B J Guy; K Haga; J Haiech; C R Harwood; A Hènaut; H Hilbert; S Holsappel; S Hosono; M F Hullo; M Itaya; L Jones; B Joris; D Karamata; Y Kasahara; M Klaerr-Blanchard; C Klein; Y Kobayashi; P Koetter; G Koningstein; S Krogh; M Kumano; K Kurita; A Lapidus; S Lardinois; J Lauber; V Lazarevic; S M Lee; A Levine; H Liu; S Masuda; C Mauël; C Médigue; N Medina; R P Mellado; M Mizuno; D Moestl; S Nakai; M Noback; D Noone; M O'Reilly; K Ogawa; A Ogiwara; B Oudega; S H Park; V Parro; T M Pohl; D Portelle; S Porwollik; A M Prescott; E Presecan; P Pujic; B Purnelle; G Rapoport; M Rey; S Reynolds; M Rieger; C Rivolta; E Rocha; B Roche; M Rose; Y Sadaie; T Sato; E Scanlan; S Schleich; R Schroeter; F Scoffone; J Sekiguchi; A Sekowska; S J Seror; P Serror; B S Shin; B Soldo; A Sorokin; E Tacconi; T Takagi; H Takahashi; K Takemaru; M Takeuchi; A Tamakoshi; T Tanaka; P Terpstra; A Togoni; V Tosato; S Uchiyama; M Vandebol; F Vannier; A Vassarotti; A Viari; R Wambutt; H Wedler; T Weitzenegger; P Winters; A Wipat; H Yamamoto; K Yamane; K Yasumoto; K Yata; K Yoshida; H F Yoshikawa; E Zumstein; H Yoshikawa; A Danchin
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

6.  Cd(II)-responsive and constitutive mutants implicate a novel domain in MerR.

Authors:  J J Caguiat; A L Watson; A O Summers
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

Review 7.  The sensing of plant signal molecules by Agrobacterium: genetic evidence for direct recognition of phenolic inducers by the VirA protein.

Authors:  Y W Lee; S Jin; W S Sim; E W Nester
Journal:  Gene       Date:  1996-11-07       Impact factor: 3.688

8.  PAD1 encodes phenylacrylic acid decarboxylase which confers resistance to cinnamic acid in Saccharomyces cerevisiae.

Authors:  M Clausen; C J Lamb; R Megnet; P W Doerner
Journal:  Gene       Date:  1994-05-03       Impact factor: 3.688

9.  Cloning, sequencing, and expression in Escherichia coli of the Bacillus pumilus gene for ferulic acid decarboxylase.

Authors:  A Zago; G Degrassi; C V Bruschi
Journal:  Appl Environ Microbiol       Date:  1995-12       Impact factor: 4.792

10.  Genetic evidence for direct sensing of phenolic compounds by the VirA protein of Agrobacterium tumefaciens.

Authors:  Y W Lee; S Jin; W S Sim; E W Nester
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

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  41 in total

1.  Structural analysis of Bacillus pumilus phenolic acid decarboxylase, a lipocalin-fold enzyme.

Authors:  Allan Matte; Stephan Grosse; Hélène Bergeron; Kofi Abokitse; Peter C K Lau
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-27

2.  A second 5-carboxyvanillate decarboxylase gene, ligW2, is important for lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6.

Authors:  Xue Peng; Eiji Masai; Daisuke Kasai; Keisuke Miyauchi; Yoshihiro Katayama; Masao Fukuda
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Gene cloning, expression, and characterization of phenolic acid decarboxylase from Lactobacillus brevis RM84.

Authors:  José María Landete; Héctor Rodríguez; José Antonio Curiel; Blanca de las Rivas; José Miguel Mancheño; Rosario Muñoz
Journal:  J Ind Microbiol Biotechnol       Date:  2010-03-24       Impact factor: 3.346

4.  Requirements for Vibrio cholerae HapR binding and transcriptional repression at the hapR promoter are distinct from those at the aphA promoter.

Authors:  Wei Lin; Gabriela Kovacikova; Karen Skorupski
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

5.  Crystal structure of the virulence gene activator AphA from Vibrio cholerae reveals it is a novel member of the winged helix transcription factor superfamily.

Authors:  Rukman S De Silva; Gabriela Kovacikova; Wei Lin; Ronald K Taylor; Karen Skorupski; F Jon Kull
Journal:  J Biol Chem       Date:  2005-01-12       Impact factor: 5.157

Review 6.  Regulatory networks controlling Vibrio cholerae virulence gene expression.

Authors:  Jyl S Matson; Jeffrey H Withey; Victor J DiRita
Journal:  Infect Immun       Date:  2007-09-17       Impact factor: 3.441

7.  The circadian clock-related gene pex regulates a negative cis element in the kaiA promoter region.

Authors:  Shinsuke Kutsuna; Takao Kondo; Haruki Ikegami; Tatsuya Uzumaki; Mitsunori Katayama; Masahiro Ishiura
Journal:  J Bacteriol       Date:  2007-08-17       Impact factor: 3.490

8.  SCO3900, co-transcripted with three downstream genes, is involved in the differentiation of Streptomyces coelicolor.

Authors:  Guohua Zhang; Yuqing Tian; Kun Hu; Chi Feng; Huarong Tan
Journal:  Curr Microbiol       Date:  2009-12-15       Impact factor: 2.188

9.  Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1.

Authors:  Minyan He; Xiangyang Li; Liang Guo; Susan J Miller; Christopher Rensing; Gejiao Wang
Journal:  BMC Microbiol       Date:  2010-08-19       Impact factor: 3.605

10.  Comparative genomic hybridization analysis of two predominant Nordic group I (proteolytic) Clostridium botulinum type B clusters.

Authors:  Miia Lindström; Katja Hinderink; Panu Somervuo; Katri Kiviniemi; Mari Nevas; Ying Chen; Petri Auvinen; Andrew T Carter; David R Mason; Michael W Peck; Hannu Korkeala
Journal:  Appl Environ Microbiol       Date:  2009-03-06       Impact factor: 4.792

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