Literature DB >> 11063936

Microarrays and cell cycle transcription in yeast.

B Futcher1.   

Abstract

Microarrays have been used to characterize gene expression through the yeast cell cycle. Computational methods have been applied to the microarray data to identify coregulated clusters of genes, and motif-finding algorithms have found promoter elements characteristic of each cluster. The functional relevance of these promoter elements can be tested using chromatin immunoprecipitation, additional microarrays and other molecular techniques. The yeast forkhead proteins have been successfully identified as cell cycle transcription factors for an important cluster of genes by this and other approaches.

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Year:  2000        PMID: 11063936     DOI: 10.1016/s0955-0674(00)00156-3

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  16 in total

1.  EBP2 is a member of the yeast RRB regulon, a transcriptionally coregulated set of genes that are required for ribosome and rRNA biosynthesis.

Authors:  C Wade; K A Shea; R V Jensen; M A McAlear
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

2.  Development and evaluation of functional gene arrays for detection of selected genes in the environment.

Authors:  L Wu; D K Thompson; G Li; R A Hurt; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

3.  Plo1(+) regulates gene transcription at the M-G(1) interval during the fission yeast mitotic cell cycle.

Authors:  Mark Anderson; Szu Shien Ng; Vanessa Marchesi; Fiona H MacIver; Frances E Stevens; Tracy Riddell; David M Glover; Iain M Hagan; Christopher J McInerny
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

4.  Identification of cell cycle-regulated genes in fission yeast.

Authors:  Xu Peng; R Krishna Murthy Karuturi; Lance D Miller; Kui Lin; Yonghui Jia; Pinar Kondu; Long Wang; Lim-Soon Wong; Edison T Liu; Mohan K Balasubramanian; Jianhua Liu
Journal:  Mol Biol Cell       Date:  2004-12-22       Impact factor: 4.138

5.  Regulation of cell cycle-specific gene expression through cyclin-dependent kinase-mediated phosphorylation of the forkhead transcription factor Fkh2p.

Authors:  Aline Pic-Taylor; Zoulfia Darieva; Brian A Morgan; Andrew D Sharrocks
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

6.  Genome-wide analysis of the response to protein glycosylation deficiency in yeast.

Authors:  Paul J Cullen; Rufeng Xu-Friedman; Jeffrey Delrow; George F Sprague
Journal:  FEMS Yeast Res       Date:  2006-12       Impact factor: 2.796

7.  MCB-mediated regulation of cell cycle-specific cdc22+ transcription in fission yeast.

Authors:  Z Maqbool; P J Kersey; P A Fantes; C J McInerny
Journal:  Mol Genet Genomics       Date:  2003-07-30       Impact factor: 3.291

8.  Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods.

Authors:  Kerby Shedden; Stephen Cooper
Journal:  Nucleic Acids Res       Date:  2002-07-01       Impact factor: 16.971

9.  Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin.

Authors:  Laurieann Casey; Erin E Patterson; Ulrika Müller; Catherine A Fox
Journal:  Mol Biol Cell       Date:  2007-11-28       Impact factor: 4.138

10.  Periodic gene expression patterns during the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae.

Authors:  Takayuki Fujiwara; Osami Misumi; Kousuke Tashiro; Yamato Yoshida; Keiji Nishida; Fumi Yagisawa; Sousuke Imamura; Masaki Yoshida; Toshiyuki Mori; Kan Tanaka; Haruko Kuroiwa; Tsuneyoshi Kuroiwa
Journal:  DNA Res       Date:  2009-01-14       Impact factor: 4.458

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