Literature DB >> 11059269

[Synonymous codon usage in Pichia pastoris].

X Zhao1, K K Huo, Y Y Li.   

Abstract

According to the synonymous codons used in 28 open reading frames from Pichia pastoris, the codon usage in this species was calculated and 19 codons have been inferred to be its optimal codons. The results show that pattern of the codon usage in P. pastoris is similar to that in S. cerevisiae and in K. lactis except for the synonymous codon of glutamic acid, which may be the special bias of P. pastoris.

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Year:  2000        PMID: 11059269

Source DB:  PubMed          Journal:  Sheng Wu Gong Cheng Xue Bao        ISSN: 1000-3061


  9 in total

1.  A simple, rapid, high-fidelity and cost-effective PCR-based two-step DNA synthesis method for long gene sequences.

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Journal:  Nucleic Acids Res       Date:  2004-07-07       Impact factor: 16.971

2.  Gene and protein sequence optimization for high-level production of fully active and aglycosylated lysostaphin in Pichia pastoris.

Authors:  Hongliang Zhao; Kristina Blazanovic; Yoonjoo Choi; Chris Bailey-Kellogg; Karl E Griswold
Journal:  Appl Environ Microbiol       Date:  2014-02-21       Impact factor: 4.792

3.  Design of thermostable beta-propeller phytases with activity over a broad range of pHs and their overproduction by Pichia pastoris.

Authors:  José M Viader-Salvadó; Juan A Gallegos-López; J Gerardo Carreón-Treviño; Miguel Castillo-Galván; Arturo Rojo-Domínguez; Martha Guerrero-Olazarán
Journal:  Appl Environ Microbiol       Date:  2010-08-06       Impact factor: 4.792

4.  High-level expression of Thermomyces dupontii thermophilic lipase in Pichia pastoris via combined strategies.

Authors:  Jianrong Wang; Zongze Wu; Tianyu Zhang; Yonghua Wang; Bo Yang
Journal:  3 Biotech       Date:  2019-02-01       Impact factor: 2.406

5.  A gene optimization strategy that enhances production of fully functional P-glycoprotein in Pichia pastoris.

Authors:  Jiangping Bai; Douglas J Swartz; Irina I Protasevich; Christie G Brouillette; Patina M Harrell; Ellen Hildebrandt; Brigitte Gasser; Diethard Mattanovich; Andrew Ward; Geoffrey Chang; Ina L Urbatsch
Journal:  PLoS One       Date:  2011-08-03       Impact factor: 3.240

6.  Non-uniqueness of factors constraint on the codon usage in Bombyx mori.

Authors:  Xian Jia; Shuyu Liu; Hao Zheng; Bo Li; Qi Qi; Lei Wei; Taiyi Zhao; Jian He; Jingchen Sun
Journal:  BMC Genomics       Date:  2015-05-06       Impact factor: 3.969

7.  Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution.

Authors:  Yongchao Zhao; Hao Zheng; Anying Xu; Donghua Yan; Zijian Jiang; Qi Qi; Jingchen Sun
Journal:  BMC Genomics       Date:  2016-08-24       Impact factor: 3.969

8.  Recombinant Expression and Bioactivity Comparison of Four Typical Fungal Immunomodulatory Proteins from Three Main Ganoderma Species.

Authors:  Zheng-Wei Qu; Si-Ya Zhou; Shi-Xin Guan; Rui Gao; Zuo-Wen Duan; Xin Zhang; Wei-Yan Sun; Wen-Li Fan; Shui-Sen Chen; Li-Jing Chen; Jing-Wei Lin; Yan-Ye Ruan
Journal:  BMC Biotechnol       Date:  2018-12-14       Impact factor: 2.563

9.  An engineered SARS-CoV-2 receptor-binding domain produced in Pichia pastoris as a candidate vaccine antigen.

Authors:  Miladys Limonta-Fernández; Glay Chinea-Santiago; Alejandro Miguel Martín-Dunn; Diamile Gonzalez-Roche; Monica Bequet-Romero; Gabriel Marquez-Perera; Isabel González-Moya; Camila Canaan-Haden-Ayala; Ania Cabrales-Rico; Luis Ariel Espinosa-Rodríguez; Yassel Ramos-Gómez; Ivan Andujar-Martínez; Luis Javier González-López; Mariela Perez de la Iglesia; Jesus Zamora-Sanchez; Otto Cruz-Sui; Gilda Lemos-Pérez; Gleysin Cabrera-Herrera; Jorge Valdes-Hernández; Eduardo Martinez-Diaz; Eulogio Pimentel-Vazquez; Marta Ayala-Avila; Gerardo Guillén-Nieto
Journal:  N Biotechnol       Date:  2022-08-08       Impact factor: 6.490

  9 in total

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