Literature DB >> 11042401

Classical swine fever virus: a second ring test to evaluate RT-PCR detection methods.

D J Paton1, A McGoldrick, E Bensaude, S Belak, C Mittelholzer, F Koenen, H Vanderhallen, I Greiser-Wilke, H Scheibner, T Stadejek, M Hofmann, B Thuer.   

Abstract

Six laboratories participated in a study to compare the sensitivity and specificity of RT-PCR tests for the detection of classical swine fever virus (CSFV). Sets of coded samples were prepared by serial dilution of positive samples and then distributed to each of the laboratories. One set comprised 25 samples of random primed cDNA, synthesised from viral RNA representative of different pestiviruses. The other set comprised samples of blood and serum obtained from virus-free or CSFV-infected pigs. Each laboratory tested the samples using PCR/RT-PCR according to a set of standardised protocols that specified the exact conditions and requirements for inclusion of control samples. Two types of test were evaluated. One amplified a part of the 5'-non coding region of the pestivirus genome by means of a closed, one-tube RT-nested PCR. The other amplified a part of the NS5B gene using non-nested RT-PCR. The results of the laboratories were compared with one another, and with those obtained earlier when similar samples were tested by the same laboratories using non-standardised methods [Paton et al., Classical swine fever virus: a ring test to evaluate RT-PCR detection methods, Vet. Microbiol., in press]. Standardisation of the protocols resulted in a more consistent test sensitivity. Three laboratories avoided significant false positive results. Others that did not, could nevertheless recognise that test specificity was inadequate from the results obtained with the control samples. Minimum requirements for the inclusion of adequate controls and periodic proficiency testing are proposed.

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Year:  2000        PMID: 11042401     DOI: 10.1016/s0378-1135(00)00264-9

Source DB:  PubMed          Journal:  Vet Microbiol        ISSN: 0378-1135            Impact factor:   3.293


  7 in total

1.  Armored RNA as virus surrogate in a real-time reverse transcriptase PCR assay proficiency panel.

Authors:  S K Hietala; B M Crossley
Journal:  J Clin Microbiol       Date:  2006-01       Impact factor: 5.948

2.  Phylogenetic analysis of NS5B gene of classical swine fever virus isolates indicates plausible Chinese origin of Indian subgroup 2.2 viruses.

Authors:  S S Patil; D Hemadri; H Veeresh; K Sreekala; M R Gajendragad; K Prabhudas
Journal:  Virus Genes       Date:  2011-01-19       Impact factor: 2.332

3.  Porcine circovirus genotypes and their copathogens in pigs with respiratory disease in southern provinces of Vietnam.

Authors:  Phat Xuan Dinh; Minh Nam Nguyen; Hien The Nguyen; Vu Hoang Tran; Quy Dinh Tran; Kim Hoang Dang; Dai Tan Vo; Hien Thanh Le; Nam Thi Thu Nguyen; Toan Tat Nguyen; Duy Tien Do
Journal:  Arch Virol       Date:  2021-01-03       Impact factor: 2.574

4.  Ring test evaluation of the detection of influenza A virus in swine oral fluids by real-time reverse-transcription polymerase chain reaction and virus isolation.

Authors:  Christa K Goodell; Jianqiang Zhang; Erin Strait; Karen Harmon; Devi Patnayak; Tracy Otterson; Marie Culhane; Jane Christopher-Hennings; Travis Clement; Pamela Leslie-Steen; Richard Hesse; Joe Anderson; Kevin Skarbek; Amy Vincent; Pravina Kitikoon; Sabrina Swenson; Melinda Jenkins-Moore; Jodi McGill; Rolf Rauh; William Nelson; Catherine O'Connell; Rohan Shah; Chong Wang; Rodger Main; Jeffrey J Zimmerman
Journal:  Can J Vet Res       Date:  2016-01       Impact factor: 1.310

5.  Development of a novel hot-start multiplex PCR for simultaneous detection of classical swine fever virus, African swine fever virus, porcine circovirus type 2, porcine reproductive and respiratory syndrome virus and porcine parvovirus.

Authors:  Monica Giammarioli; Claudia Pellegrini; Cristina Casciari; Gian Mario De Mia
Journal:  Vet Res Commun       Date:  2007-11-02       Impact factor: 2.459

6.  Validation of a real time PCR for classical Swine Fever diagnosis.

Authors:  Natanael Lamas Dias; Antônio Augusto Fonseca Júnior; Anapolino Macedo Oliveira; Erica Bravo Sales; Bruna Rios Coelho Alves; Fernanda Alves Dorella; Marcelo Fernandes Camargos
Journal:  Vet Med Int       Date:  2014-04-09

Review 7.  Classical Swine Fever-An Updated Review.

Authors:  Sandra Blome; Christoph Staubach; Julia Henke; Jolene Carlson; Martin Beer
Journal:  Viruses       Date:  2017-04-21       Impact factor: 5.048

  7 in total

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