Literature DB >> 11038349

Structural events during the refolding of an all beta-sheet protein.

D Samuel1, T K Kumar, K Balamurugan, W Y Lin, D H Chin, C Yu.   

Abstract

The refolding kinetics of the 140-residue, all beta-sheet, human fibroblast growth factor (hFGF-1) is studied using a variety of biophysical techniques such as stopped-flow fluorescence, stopped-flow circular dichroism, and quenched-flow hydrogen exchange in conjunction with multidimensional NMR spectroscopy. Urea-induced unfolding of hFGF-1 under equilibrium conditions reveals that the protein folds via a two-state (native <--> unfolded) mechanism without the accumulation of stable intermediates. However, measurement of the unfolding and refolding rates in various concentrations of urea shows that the refolding of hFGF-1 proceeds through accumulation of kinetic intermediates. Results of the quenched-flow hydrogen exchange experiments reveal that the hydrogen bonds linking the N- and C-terminal ends are the first to form during the refolding of hFGF-1. The basic beta-trefoil framework is provided by the simultaneous formation of beta-strands I, IV, IX, and X. The other beta-strands comprising the beta-barrel structure of hFGF-1 are formed relatively slowly with time constants ranging from 4 to 13 s.

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Year:  2000        PMID: 11038349     DOI: 10.1074/jbc.M005921200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  13 in total

1.  Accommodation of a highly symmetric core within a symmetric protein superfold.

Authors:  Stephen R Brych; Jaewon Kim; Timothy M Logan; Michael Blaber
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

2.  Multiple routes lead to the native state in the energy landscape of the beta-trefoil family.

Authors:  Leslie L Chavez; Shachi Gosavi; Patricia A Jennings; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-26       Impact factor: 11.205

3.  Analysis of oligomeric proteins during unfolding by pH and temperature.

Authors:  Pradip Bhattacharya; Tamil Ganeshan; Soumiyadeep Nandi; Alok Srivastava; Prashant Singh; Mohommad Rehan; Reshmi Rashkush; Naidu Subbarao; Andrew Lynn
Journal:  J Mol Model       Date:  2009-02-11       Impact factor: 1.810

4.  Conserved and nonconserved features of the folding pathway of hisactophilin, a beta-trefoil protein.

Authors:  Chengsong Liu; Joe A Gaspar; Hannah J Wong; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

5.  Ca(II)- and Tb(III)-induced stabilization and refolding of anticoagulation factor I from the venom of Agkistrodon acutus.

Authors:  Xiaolong Xu; Qingliang Liu; Huaming Yu; Yongshu Xie
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

6.  Folding of an all-helical Greek-key protein monitored by quenched-flow hydrogen-deuterium exchange and NMR spectroscopy.

Authors:  Lesley H Greene; Hai Li; Junyan Zhong; Guoxia Zhao; Khym Wilson
Journal:  Eur Biophys J       Date:  2011-12-01       Impact factor: 1.733

7.  Investigating the refolding pathway of human acidic fibroblast growth factor (hFGF-1) from the residual structure(s) obtained by denatured-state hydrogen/deuterium exchange.

Authors:  Han-Min Wang; Chin Yu
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

8.  Experimental support for the foldability-function tradeoff hypothesis: segregation of the folding nucleus and functional regions in fibroblast growth factor-1.

Authors:  Liam Longo; Jihun Lee; Michael Blaber
Journal:  Protein Sci       Date:  2012-11-06       Impact factor: 6.725

9.  Structurally homologous all beta-barrel proteins adopt different mechanisms of folding.

Authors:  Thiagarajan Srimathi; Thallampuranam Krishnaswamy S Kumar; Karuppanan Muthusamy Kathir; Ya-Hui Chi; Sampath Srisailam; Wann-Yin Lin; Ing-Ming Chiu; Chin Yu
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

10.  Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity.

Authors:  Rita Pancsa; Daniele Raimondi; Elisa Cilia; Wim F Vranken
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

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