Literature DB >> 11038340

Visualizing large hierarchical clusters in hyperbolic space.

J Bingham1, S Sudarsanam.   

Abstract

SUMMARY: HyperTree is an application to visualize and navigate large trees in hyperbolic space. It includes color-coding, search mechanisms and navigational aids, as well as focus+context viewing, allowing enormous trees to fit within the fixed space of a computer screen or printed page.

Mesh：

Substances：

Year:  2000        PMID： 11038340     DOI： 10.1093/bioinformatics/16.7.660

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  48 in total

1.  C2 domain is responsible for targeting rice phosphoinositide specific phospholipase C.

Authors:  Sunny D Rupwate; Ram Rajasekharan
Journal:  Plant Mol Biol       Date:  2011-11-29       Impact factor: 4.076

2.  A genome-wide analysis of population structure in the Finnish Saami with implications for genetic association studies.

Authors:  Jeroen R Huyghe; Erik Fransen; Samuli Hannula; Lut Van Laer; Els Van Eyken; Elina Mäki-Torkko; Pekka Aikio; Martti Sorri; Matthew J Huentelman; Guy Van Camp
Journal:  Eur J Hum Genet       Date:  2010-12-08       Impact factor: 4.246

3.  Proteomic profiling of metalloprotease activities with cocktails of active-site probes.

Authors:  Stephan A Sieber; Sherry Niessen; Heather S Hoover; Benjamin F Cravatt
Journal:  Nat Chem Biol       Date:  2006-03-26       Impact factor: 15.040

4.  The primate-specific protein TBC1D3 is required for optimal macropinocytosis in a novel ARF6-dependent pathway.

Authors:  Emanuela Frittoli; Andrea Palamidessi; Alessandro Pizzigoni; Letizia Lanzetti; Massimiliano Garrè; Flavia Troglio; Albino Troilo; Mitsunori Fukuda; Pier Paolo Di Fiore; Giorgio Scita; Stefano Confalonieri
Journal:  Mol Biol Cell       Date:  2008-01-16       Impact factor: 4.138

Review 5.  Visualization of multiple alignments, phylogenies and gene family evolution.

Authors:  James B Procter; Julie Thompson; Ivica Letunic; Chris Creevey; Fabrice Jossinet; Geoffrey J Barton
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

6.  Basis for substrate recognition and distinction by matrix metalloproteinases.

Authors:  Boris I Ratnikov; Piotr Cieplak; Kosi Gramatikoff; James Pierce; Alexey Eroshkin; Yoshinobu Igarashi; Marat Kazanov; Qing Sun; Adam Godzik; Andrei Osterman; Boguslaw Stec; Alex Strongin; Jeffrey W Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

7.  Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli.

Authors:  Gregory Bokinsky; Pamela P Peralta-Yahya; Anthe George; Bradley M Holmes; Eric J Steen; Jeffrey Dietrich; Taek Soon Lee; Danielle Tullman-Ercek; Christopher A Voigt; Blake A Simmons; Jay D Keasling
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

8.  A reference guide for tree analysis and visualization.

Authors:  Georgios A Pavlopoulos; Theodoros G Soldatos; Adriano Barbosa-Silva; Reinhard Schneider
Journal:  BioData Min       Date:  2010-02-22       Impact factor: 2.522

9.  Conservation of the glucan phosphatase laforin is linked to rates of molecular evolution and the glucan metabolism of the organism.

Authors:  Matthew S Gentry; Rachel M Pace
Journal:  BMC Evol Biol       Date:  2009-06-22       Impact factor: 3.260

10.  A comparison of reptilian and avian olfactory receptor gene repertoires: species-specific expansion of group gamma genes in birds.

Authors:  Silke S Steiger; Vladimir Y Kuryshev; Marcus C Stensmyr; Bart Kempenaers; Jakob C Mueller
Journal:  BMC Genomics       Date:  2009-09-21       Impact factor: 3.969
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