Literature DB >> 11034586

Evaluation of global DNA hypomethylation in human colon cancer tissues by immunohistochemistry and image analysis.

F J Hernandez-Blazquez1, M Habib, J M Dumollard, C Barthelemy, M Benchaib, A de Capoa, A Niveleau.   

Abstract

BACKGROUND: Global hypomethylation of DNA is frequently observed in human tumours. This alteration is detected in early adenomas in colorectal tumorigenesis. Information is currently acquired after extraction of DNA from tissues, digestion with nucleases, and analysis by reverse phase chromatography, or treatment with restriction enzymes followed by gel electrophoresis analysis and Southern hybridisation with radiolabelled probes. AIMS: The purpose of our work was to evaluate the global methylation status of DNA in malignant lesions without loosing the histopathological features of the samples. PATIENTS: The investigation was performed on paired normal-tumour tissues from 13 patients undergoing surgical resection of colorectal adenocarcinomas.
METHODS: Antibodies raised against 5-methylcytidine can be used to label methyl rich regions in interphase nuclei. This technique was adapted to the study of paraffin embedded tissues and an immunohistochemical method was developed to assess the global methylation status of individual nuclei while preserving cell morphology and tissue architecture. Computer assisted quantification of the staining intensity was performed on malignant and normal zones of human colon tissues to test the correlation between the immunolabelling signal and the respective histological patterns observed.
RESULTS: Qualitative and quantitative differences were observed and measured between the normal and malignant part of each sample. Morphologically altered nuclei displayed densely labelled spots within faintly labelled areas whereas normal nuclei were darker and uniformly stained. Image analysis allowed calculation of the average integrated optical density of the nuclei in both types of tissues, demonstrating a constant and significantly lower intensity for the former type of cells.

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Year:  2000        PMID: 11034586      PMCID: PMC1728119          DOI: 10.1136/gut.47.5.689

Source DB:  PubMed          Journal:  Gut        ISSN: 0017-5749            Impact factor:   23.059


  35 in total

1.  Demethylation of the zygotic paternal genome.

Authors:  W Mayer; A Niveleau; J Walter; R Fundele; T Haaf
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

2.  Methylation levels of normal and chronic lymphocytic leukemia B lymphocytes: computer-assisted quantitative analysis of anti-5-methylcytosine antibody binding to individual nuclei.

Authors:  A de Capoa; C Grappelli; F R Febbo; A Spanò; A Niveleau; A Cafolla; I Cordone; R Foa
Journal:  Cytometry       Date:  1999-06-01

3.  Computer-assisted analysis of methylation status of individual interphase nuclei in human cultured cells.

Authors:  A de Capoa; M Di Leandro; C Grappelli; F Menendez; I Poggesi; P Giancotti; M R Marotta; A Spanò; M Rocchi; N Archidiacono; A Niveleau
Journal:  Cytometry       Date:  1998-02-01

4.  DNA hypomethylation in breast cancer: an independent parameter of tumor progression?

Authors:  J Bernardino; C Roux; A Almeida; N Vogt; A Gibaud; M Gerbault-Seureau; H Magdelenat; C A Bourgeois; B Malfoy; B Dutrillaux
Journal:  Cancer Genet Cytogenet       Date:  1997-09

5.  DNA methylation and genetic instability in colorectal cancer cells.

Authors:  C Lengauer; K W Kinzler; B Vogelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

6.  Association between CpG island methylation and microsatellite instability in colorectal cancer.

Authors:  N Ahuja; A L Mohan; Q Li; J M Stolker; J G Herman; S R Hamilton; S B Baylin; J P Issa
Journal:  Cancer Res       Date:  1997-08-15       Impact factor: 12.701

7.  Satellite DNA hypomethylation vs. overall genomic hypomethylation in ovarian epithelial tumors of different malignant potential.

Authors:  G Qu; L Dubeau; A Narayan; M C Yu; M Ehrlich
Journal:  Mutat Res       Date:  1999-01-25       Impact factor: 2.433

8.  Reduced levels of poly(ADP-ribosyl)ation result in chromatin compaction and hypermethylation as shown by cell-by-cell computer-assisted quantitative analysis.

Authors:  A de Capoa; F R Febbo; F Giovannelli; A Niveleau; G Zardo; S Marenzi; P Caiafa
Journal:  FASEB J       Date:  1999-01       Impact factor: 5.191

9.  Hypermethylation of the hMLH1 promoter in colon cancer with microsatellite instability.

Authors:  J M Cunningham; E R Christensen; D J Tester; C Y Kim; P C Roche; L J Burgart; S N Thibodeau
Journal:  Cancer Res       Date:  1998-08-01       Impact factor: 12.701

10.  Chromosome division figures reveal genomic instability in tumorigenesis of human colon mucosa.

Authors:  R G Steinbeck
Journal:  Br J Cancer       Date:  1998-04       Impact factor: 7.640

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  23 in total

1.  Pattern of nonspecific (or global) DNA methylation in oral carcinogenesis.

Authors:  Chandrika J Piyathilake; Walter C Bell; Jennifer Jones; Olga L Henao; Douglas C Heimburger; Alain Niveleau; William E Grizzle
Journal:  Head Neck       Date:  2005-12       Impact factor: 3.147

2.  Global hypomethylation of genomic DNA in cancer-associated myofibroblasts.

Authors:  Le Jiang; Tamas A Gonda; Mary V Gamble; Martha Salas; Venkatraman Seshan; Shuiping Tu; William S Twaddell; Peter Hegyi; Gyorgy Lazar; Islay Steele; Andrea Varro; Timothy C Wang; Benjamin Tycko
Journal:  Cancer Res       Date:  2008-12-01       Impact factor: 12.701

3.  Relation between normal rectal methylation, smoking status, and the presence or absence of colorectal adenomas.

Authors:  Bogdan C Paun; Debra Kukuruga; Zhe Jin; Yuriko Mori; Yulan Cheng; Mark Duncan; Sanford A Stass; Elizabeth Montgomery; David Hutcheon; Stephen J Meltzer
Journal:  Cancer       Date:  2010-10-01       Impact factor: 6.860

4.  Prevention of age-related changes in hippocampal levels of 5-methylcytidine by caloric restriction.

Authors:  Leonidas Chouliaras; Daniel L A van den Hove; Gunter Kenis; Stella Keitel; Patrick R Hof; Jim van Os; Harry W M Steinbusch; Christoph Schmitz; Bart P F Rutten
Journal:  Neurobiol Aging       Date:  2011-07-18       Impact factor: 4.673

5.  Global acetylation and methylation changes predict papillary urothelial neoplasia of low malignant potential recurrence: a quantitative analysis.

Authors:  R Mazzucchelli; M Scarpelli; A Lopez-Beltran; L Cheng; H Bartels; P H Bartels; D S Alberts; R Montironi
Journal:  Int J Immunopathol Pharmacol       Date:  2011 Apr-Jun       Impact factor: 3.219

6.  Global DNA methylation evaluation: potential complementary marker in differential diagnosis of thyroid neoplasia.

Authors:  Bogdan Galusca; Jean Marc Dumollard; Sandrine Lassandre; Alain Niveleau; Jean Michel Prades; Bruno Estour; Michel Peoc'h
Journal:  Virchows Arch       Date:  2005-05-13       Impact factor: 4.064

Review 7.  Epigenetic control of nuclear architecture.

Authors:  J Espada; M Esteller
Journal:  Cell Mol Life Sci       Date:  2007-02       Impact factor: 9.261

8.  Choline availability modulates human neuroblastoma cell proliferation and alters the methylation of the promoter region of the cyclin-dependent kinase inhibitor 3 gene.

Authors:  Mihai D Niculescu; Yutaka Yamamuro; Steven H Zeisel
Journal:  J Neurochem       Date:  2004-06       Impact factor: 5.372

9.  Correlation between the DNA global methylation status and progesterone receptor expression in normal endometrium, endometrioid adenocarcinoma and precursors.

Authors:  Lina Ghabreau; Jean Paul Roux; Alain Niveleau; Bernard Fontanière; Cédric Mahe; Moncef Mokni; Lucien Frappart
Journal:  Virchows Arch       Date:  2004-06-19       Impact factor: 4.064

Review 10.  DNA hypomethylation in cancer cells.

Authors:  Melanie Ehrlich
Journal:  Epigenomics       Date:  2009-12       Impact factor: 4.778

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