Literature DB >> 11031283

Motion and disorder in crystal structure analysis: measuring and distinguishing them.

H B Bürgi1.   

Abstract

Dynamic processes in crystalline solids are reflected in the atomic displacement amplitudes determined, together with the atomic coordinates, by crystal structure analysis. The interpretation of such amplitudes poses two severe problems: (a) The relative phases of the atomic displacements are lost; and (b) the amplitudes may reflect disorder in the structure and systematic error in the diffraction experiment in addition to motion, but the three contributions cannot be separated on the basis of measurements at a single temperature. Several approximate ways to solve these problems, e.g. rigid-body and segmented-rigid-body analysis, are reviewed together with their limitations. A more recent approach that represents a significant advance with respect to both difficulties is also described: Crystal structures are determined over a range of temperatures; the mean square amplitude quantities are interpreted by taking explicit account of their temperature dependence, i.e. by exploiting the difference in behavior of a microscopic oscillator in the low-temperature, quantum regime and in the high-temperature, classical regime. A distinction between low-frequency and high-frequency motion, disorder, and systematic error becomes possible with this model; this is illustrated with the help of case studies.

Entities:  

Year:  2000        PMID: 11031283     DOI: 10.1146/annurev.physchem.51.1.275

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  6 in total

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Authors:  C J Jackson; J-L Foo; N Tokuriki; L Afriat; P D Carr; H-K Kim; G Schenk; D S Tawfik; D L Ollis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

2.  Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structures.

Authors:  Antonija Kuzmanic; Daniela Kruschel; Wilfred F van Gunsteren; Navraj S Pannu; Bojan Zagrovic
Journal:  J Mol Biol       Date:  2011-05-30       Impact factor: 5.469

3.  X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals.

Authors:  Antonija Kuzmanic; Navraj S Pannu; Bojan Zagrovic
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

4.  Interplay of thermal diffuse scattering and correlated compositional disorder in KCl1-xBrx.

Authors:  Ella Mara Schmidt; Sofia Thomas; Johnathan M Bulled; Arianna Minelli; Andrew L Goodwin
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-05-11

5.  Jahn-Teller Effects in a Vanadate-Stabilized Manganese-Oxo Cubane Water Oxidation Catalyst.

Authors:  Sebastian Mai; Marcus Holzer; Anastasia Andreeva; Leticia González
Journal:  Chemistry       Date:  2021-11-05       Impact factor: 5.020

6.  How to get maximum structure information from anisotropic displacement parameters obtained by three-dimensional electron diffraction: an experimental study on metal-organic frameworks.

Authors:  Laura Samperisi; Xiaodong Zou; Zhehao Huang
Journal:  IUCrJ       Date:  2022-06-08       Impact factor: 5.588

  6 in total

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