Literature DB >> 11026679

Analytical ultracentrifugation and the characterization of chromatin structure.

J Ausió1.   

Abstract

This mini review consists of two parts. The first part will provide a brief overview of the theoretical aspects involved in the two kinds of experiments that can be conducted with the analytical ultracentrifuge (sedimentation velocity and sedimentation equilibrium) as they pertain to the study of chromatin. In the following sections, I describe the analytical ultracentrifuge experiments which, in my opinion, have contributed the most to our understanding of chromatin. Few other biophysical techniques, with the exception of X-ray scattering and diffraction, have contributed as extensively as the analytical ultracentrifuge to the characterization of so many different aspects of chromatin structure. In the course of his scientific career, Professor Henryk Eisenberg has made many important contributions to the theoretical aspects underlying ultracentrifuge analysis, especially in the analysis of solutions of polyelectrolytes and biological macromolecules [H. Eisenberg, Biological macromolecules and polyelectrolytes in solution, Clarendon Press, Oxford, 1976]. As an example he has devoted some of his research effort to the characterization of chromatin in solution. This review includes these important contributions.

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Year:  2000        PMID: 11026679     DOI: 10.1016/s0301-4622(00)00144-7

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  6 in total

1.  Assembly of nucleosomal arrays from recombinant core histones and nucleosome positioning DNA.

Authors:  Ryan A Rogge; Anna A Kalashnikova; Uma M Muthurajan; Mary E Porter-Goff; Karolin Luger; Jeffrey C Hansen
Journal:  J Vis Exp       Date:  2013-09-10       Impact factor: 1.355

2.  Phosphorylation of histone H2A.X by DNA-dependent protein kinase is not affected by core histone acetylation, but it alters nucleosome stability and histone H1 binding.

Authors:  Andra Li; Yaping Yu; Sheng-Chun Lee; Toyotaka Ishibashi; Susan P Lees-Miller; Juan Ausió
Journal:  J Biol Chem       Date:  2010-03-31       Impact factor: 5.157

3.  Computer modeling reveals that modifications of the histone tail charges define salt-dependent interaction of the nucleosome core particles.

Authors:  Ye Yang; Alexander P Lyubartsev; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

4.  Chromatin compaction under mixed salt conditions: opposite effects of sodium and potassium ions on nucleosome array folding.

Authors:  Abdollah Allahverdi; Qinming Chen; Nikolay Korolev; Lars Nordenskiöld
Journal:  Sci Rep       Date:  2015-02-17       Impact factor: 4.379

5.  Interaction of chromatin with a histone H1 containing swapped N- and C-terminal domains.

Authors:  Jordana B Hutchinson; Manjinder S Cheema; Jason Wang; Krystal Missiaen; Ron Finn; Rodrigo Gonzalez Romero; John P H Th'ng; Michael Hendzel; Juan Ausió
Journal:  Biosci Rep       Date:  2015-04-27       Impact factor: 3.840

6.  Chromatin Liquid-Liquid Phase Separation (LLPS) Is Regulated by Ionic Conditions and Fiber Length.

Authors:  Qinming Chen; Lei Zhao; Aghil Soman; Anastasia Yu Arkhipova; Jindi Li; Hao Li; Yinglu Chen; Xiangyan Shi; Lars Nordenskiöld
Journal:  Cells       Date:  2022-10-06       Impact factor: 7.666

  6 in total

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