Literature DB >> 11019812

A genomic perspective on plant transcription factors.

J L Riechmann1, O J Ratcliffe.   

Abstract

Data from the Arabidopsis genome project suggest that more than 5% of the genes of this plant encode transcription factors. The necessity for the use of genomic analytical approaches becomes clear when it is considered that less than 10% of these factors have been genetically characterized. A variety of tools for functional genomic analyses in plants have been developed over the past few years. The availability of the full complement of Arabidopsis transcription factors, together with the results of recent studies that illustrate some of the challenges to their functional characterization, now provides the basic framework for future analyses of transcriptional regulation in plants.

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Year:  2000        PMID: 11019812     DOI: 10.1016/s1369-5266(00)00107-2

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  140 in total

1.  Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling.

Authors:  Paul J Rushton; Anja Reinstädler; Volker Lipka; Bernadette Lippok; Imre E Somssich
Journal:  Plant Cell       Date:  2002-04       Impact factor: 11.277

2.  Regulation of flowering in Arabidopsis by an FLC homologue.

Authors:  O J Ratcliffe; G C Nadzan; T L Reuber; J L Riechmann
Journal:  Plant Physiol       Date:  2001-05       Impact factor: 8.340

3.  Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis.

Authors:  Ki-Young Yang; Young-Mi Kim; Seunghee Lee; Pill-Soon Song; Moon-Soo Soh
Journal:  Plant Physiol       Date:  2003-11-26       Impact factor: 8.340

4.  Characterisation of the DNA-binding profile of barley HvCBF1 using an enzymatic method for rapid, quantitative and high-throughput analysis of the DNA-binding activity.

Authors:  Gang-Ping Xue
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

5.  Regulation of transgene expression in plants with polydactyl zinc finger transcription factors.

Authors:  M Isabel Ordiz; Carlos F Barbas; Roger N Beachy
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

6.  Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.

Authors:  Wei Gong; Yun-Ping Shen; Li-Geng Ma; Yi Pan; Yun-Long Du; Dong-Hui Wang; Jian-Yu Yang; Li-De Hu; Xin-Fang Liu; Chun-Xia Dong; Li Ma; Yan-Hui Chen; Xiao-Yuan Yang; Ying Gao; Danmeng Zhu; Xiaoli Tan; Jin-Ye Mu; Da-Bing Zhang; Yu-Le Liu; S P Dinesh-Kumar; Yi Li; Xi-Ping Wang; Hong-Ya Gu; Li-Jia Qu; Shu-Nong Bai; Ying-Tang Lu; Jia-Yang Li; Jin-Dong Zhao; Jianru Zuo; Hai Huang; Xing Wang Deng; Yu-Xian Zhu
Journal:  Plant Physiol       Date:  2004-06       Impact factor: 8.340

7.  Transcriptional regulation: a genomic overview.

Authors:  José Luis Riechmann
Journal:  Arabidopsis Book       Date:  2002-04-04

8.  Increased senescence-associated gene expression and lipid peroxidation induced by iron deficiency in rice roots.

Authors:  Raul Antonio Sperotto; Tatiana Boff; Guilherme Leitão Duarte; Janette Palma Fett
Journal:  Plant Cell Rep       Date:  2007-08-24       Impact factor: 4.570

9.  A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.

Authors:  Sophia Ng; Aneta Ivanova; Owen Duncan; Simon R Law; Olivier Van Aken; Inge De Clercq; Yan Wang; Chris Carrie; Lin Xu; Beata Kmiec; Hayden Walker; Frank Van Breusegem; James Whelan; Estelle Giraud
Journal:  Plant Cell       Date:  2013-09-17       Impact factor: 11.277

10.  Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Authors:  Alain Lecharny; Nathalie Boudet; Isabelle Gy; Sébastien Aubourg; Martin Kreis
Journal:  J Struct Funct Genomics       Date:  2003
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