Literature DB >> 11018277

The addition of low numbers of 3' thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports.

T J Brown1, R M Anthony.   

Abstract

Oligonucleotide arrays can be used for the analysis of microbial nucleic acid. The addition of high numbers of dTTP to the 3' ends of oligonucleotides using terminal transferase has been shown to facilitate membrane binding. This paper demonstrates low numbers of thymine bases added to the 3' end of oligonucleotides during synthesis can improve hybridisation signal intensity where the signal seen with the unmodified oligonucleotides is poor. Thus, the addition of variable numbers of thymine bases to different oligonucleotides allows the production of oligonucleotide arrays producing strong interpretable hybridisation signals.

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Year:  2000        PMID: 11018277     DOI: 10.1016/s0167-7012(00)00175-5

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  16 in total

1.  Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus.

Authors:  Sheng Kai Tung; Lee Jene Teng; Mario Vaneechoutte; Hung Mo Chen; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2006-10-25       Impact factor: 5.948

2.  Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray.

Authors:  Nancy Stralis-Pavese; Guy C J Abell; Angela Sessitsch; Levente Bodrossy
Journal:  Nat Protoc       Date:  2011-04-14       Impact factor: 13.491

3.  Identification of clinically important anaerobic bacteria by an oligonucleotide array.

Authors:  Yu Tzu Lin; Mario Vaneechoutte; Ay Huey Huang; Lee Jene Teng; Hung-Mo Chen; Shu-Li Su; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2010-02-03       Impact factor: 5.948

4.  Identification of medically important molds by an oligonucleotide array.

Authors:  Chen Ren Hsiao; Liyin Huang; Jean-Philippe Bouchara; Richard Barton; Hsin Chieh Li; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

5.  Molecular analysis of isoniazid-resistant Mycobacterium tuberculosis isolates from England and Wales reveals the phylogenetic significance of the ahpC -46A polymorphism.

Authors:  L V Baker; T J Brown; O Maxwell; A L Gibson; Z Fang; M D Yates; F A Drobniewski
Journal:  Antimicrob Agents Chemother       Date:  2005-04       Impact factor: 5.191

6.  Facile DNA immobilization on surfaces through a catecholamine polymer.

Authors:  Hyun Ok Ham; Zhongqiang Liu; K H Aaron Lau; Haeshin Lee; Phillip B Messersmith
Journal:  Angew Chem Int Ed Engl       Date:  2010-12-22       Impact factor: 15.336

7.  Oligonucleotide array-based identification of species in the Acinetobacter calcoaceticus-A. baumannii complex in isolates from blood cultures and antimicrobial susceptibility testing of the isolates.

Authors:  Wen-Chien Ko; Nan-Yao Lee; Siou Cing Su; Lenie Dijkshoorn; Mario Vaneechoutte; Li-Rong Wang; Jin-Jou Yan; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2008-04-02       Impact factor: 5.948

8.  Efficient identification of clinically relevant Candida yeast species by use of an assay combining panfungal loop-mediated isothermal DNA amplification with hybridization to species-specific oligonucleotide probes.

Authors:  João Inácio; Orfeu Flores; Isabel Spencer-Martins
Journal:  J Clin Microbiol       Date:  2007-12-12       Impact factor: 5.948

9.  Identification of legionella species by use of an oligonucleotide array.

Authors:  Hsun-Pi Su; Seng-Kai Tung; Lei-Ron Tseng; Wen-Cherng Tsai; Tung-Ching Chung; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2009-03-04       Impact factor: 5.948

10.  Identification of dermatophytes by an oligonucleotide array.

Authors:  Hsin Chieh Li; Jean-Philippe Bouchara; Mark Ming-Long Hsu; Richard Barton; Tsung Chain Chang
Journal:  J Clin Microbiol       Date:  2007-08-08       Impact factor: 5.948

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