Literature DB >> 11017201

Structural proteomics of an archaeon.

D Christendat1, A Yee, A Dharamsi, Y Kluger, A Savchenko, J R Cort, V Booth, C D Mackereth, V Saridakis, I Ekiel, G Kozlov, K L Maxwell, N Wu, L P McIntosh, K Gehring, M A Kennedy, A R Davidson, E F Pai, M Gerstein, A M Edwards, C H Arrowsmith.   

Abstract

A set of 424 nonmembrane proteins from Methanobacterium thermoautotrophicum were cloned, expressed and purified for structural studies. Of these, approximately 20% were found to be suitable candidates for X-ray crystallographic or NMR spectroscopic analysis without further optimization of conditions, providing an estimate of the number of the most accessible structural targets in the proteome. A retrospective analysis of the experimental behavior of these proteins suggested some simple relations between sequence and solubility, implying that data bases of protein properties will be useful in optimizing high throughput strategies. Of the first 10 structures determined, several provided clues to biochemical functions that were not detectable from sequence analysis, and in many cases these putative functions could be readily confirmed by biochemical methods. This demonstrates that structural proteomics is feasible and can play a central role in functional genomics.

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Year:  2000        PMID: 11017201     DOI: 10.1038/82823

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  99 in total

1.  Relating whole-genome expression data with protein-protein interactions.

Authors:  Ronald Jansen; Dov Greenbaum; Mark Gerstein
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

2.  Streptococcus pneumonia YlxR at 1.35 A shows a putative new fold.

Authors:  J Osipiuk; P Górnicki; L Maj; I Dementieva; R Laskowski; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-10-25

3.  A solubility-enhancement tag (SET) for NMR studies of poorly behaving proteins.

Authors:  P Zhou; A A Lugovskoy; G Wagner
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

4.  SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Authors:  P Bertone; Y Kluger; N Lan; D Zheng; D Christendat; A Yee; A M Edwards; C H Arrowsmith; G T Montelione; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

5.  An NMR approach to structural proteomics.

Authors:  Adelinda Yee; Xiaoqing Chang; Antonio Pineda-Lucena; Bin Wu; Anthony Semesi; Brian Le; Theresa Ramelot; Gregory M Lee; Sudeepa Bhattacharyya; Pablo Gutierrez; Aleksej Denisov; Chang-Hun Lee; John R Cort; Guennadi Kozlov; Jack Liao; Grzegorz Finak; Limin Chen; David Wishart; Weontae Lee; Lawrence P McIntosh; Kalle Gehring; Michael A Kennedy; Aled M Edwards; Cheryl H Arrowsmith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

6.  NMR-based structure of the conserved protein MTH865 from the archaeon Methanobacterium thermoautotrophicum.

Authors:  G M Lee; A M Edwards; C H Arrowsmith; L P McIntosh
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

7.  Solution structure of the hypothetical protein MTH0637 from Methanobacterium thermoautotrophicum.

Authors:  Antonio Pineda-Lucena; Gwan-Su Yi; Xiaoqing Chang; John R Cort; Michael A Kennedy; Aled M Edwards; Cheryl H Arrowsmith
Journal:  J Biomol NMR       Date:  2002-03       Impact factor: 2.835

8.  The crystal structure of hypothetical protein MTH1491 from Methanobacterium thermoautotrophicum.

Authors:  Dinesh Christendat; Vivian Saridakis; Youngchang Kim; Ponni A Kumar; Xiaohui Xu; Anthony Semesi; Andzrej Joachimiak; Cheryl H Arrowsmith; Aled M Edwards
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

9.  Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.

Authors:  Patrick Aloy; Baldomero Oliva; Enrique Querol; Francesc X Aviles; Robert B Russell
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

10.  High-throughput expression of C. elegans proteins.

Authors:  Chi-Hao Luan; Shihong Qiu; James B Finley; Mike Carson; Rita J Gray; Wenying Huang; David Johnson; Jun Tsao; Jérôme Reboul; Philippe Vaglio; David E Hill; Marc Vidal; Lawrence J Delucas; Ming Luo
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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