Literature DB >> 11015604

A novel, sensitive detection system for high-density microarrays using dendrimer technology.

R L Stears1, R C Getts, S R Gullans.   

Abstract

To improve signal detection on cDNA microarrays, we adapted a fluorescent oligonucleotide dendrimeric signal amplification system to microarray technology. This signal detection method requires 16-fold less RNA for probe synthesis, does not depend on the incorporation of fluorescent dNTPs into a reverse transcription reaction, generates a high signal-to-background ratio, and can be used to allow for multichannel detection on a single chip. Furthermore, since the dendrimers can be detected individually, it may be possible, by employing dendrimer-binding standards, to calculate the numbers of bound cDNAs can be estimated. These features make the dendrimer signal detection reagent ideal for high-throughput functional genomics research.

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Year:  2000        PMID: 11015604     DOI: 10.1152/physiolgenomics.2000.3.2.93

Source DB:  PubMed          Journal:  Physiol Genomics        ISSN: 1094-8341            Impact factor:   3.107


  39 in total

1.  Signal amplification by rolling circle amplification on DNA microarrays.

Authors:  G Nallur; C Luo; L Fang; S Cooley; V Dave; J Lambert; K Kukanskis; S Kingsmore; R Lasken; B Schweitzer
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

2.  A highly reproducible, linear, and automated sample preparation method for DNA microarrays.

Authors:  David R Dorris; Ramesh Ramakrishnan; Dionisios Trakas; Frank Dudzik; Richard Belval; Connie Zhao; Allen Nguyen; Marc Domanus; Abhijit Mazumder
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

3.  Directly labeled mRNA produces highly precise and unbiased differential gene expression data.

Authors:  Vineet Gupta; Alex Cherkassky; Pamela Chatis; Richard Joseph; Andrew L Johnson; Jeffrey Broadbent; Tom Erickson; James DiMeo
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

4.  A new strategy to amplify degraded RNA from small tissue samples for microarray studies.

Authors:  Charlie C Xiang; Mei Chen; Li Ma; Quang N Phan; Jason M Inman; Olga A Kozhich; Michael J Brownstein
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

5.  Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis.

Authors:  L Petalidis; S Bhattacharyya; G A Morris; V P Collins; T C Freeman; P A Lyons
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

Review 6.  High throughput gene expression profiling: a molecular approach to integrative physiology.

Authors:  Mingyu Liang; Allen W Cowley; Andrew S Greene
Journal:  J Physiol       Date:  2004-01-01       Impact factor: 5.182

7.  Single primer amplification (SPA) of cDNA for microarray expression analysis.

Authors:  Lee Smith; Peter Underhill; Clare Pritchard; Zuzanna Tymowska-Lalanne; Saba Abdul-Hussein; Helen Hilton; Laura Winchester; Deborah Williams; Tom Freeman; Sarah Webb; Andy Greenfield
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

8.  Methods for genome-wide analysis of gene expression changes in polyploids.

Authors:  Jianlin Wang; Jinsuk J Lee; Lu Tian; Hyeon-Se Lee; Meng Chen; Sheetal Rao; Edward N Wei; R W Doerge; Luca Comai; Z Jeffrey Chen
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

9.  Microarray-based comparison of three amplification methods for nanogram amounts of total RNA.

Authors:  Ruchira Singh; Rajanikanth J Maganti; Sairam V Jabba; Martin Wang; Glenn Deng; Joe Don Heath; Nurith Kurn; Philine Wangemann
Journal:  Am J Physiol Cell Physiol       Date:  2004-12-21       Impact factor: 4.249

10.  A network model of a cooperative genetic landscape in brain tumors.

Authors:  Markus Bredel; Denise M Scholtens; Griffith R Harsh; Claudia Bredel; James P Chandler; Jaclyn J Renfrow; Ajay K Yadav; Hannes Vogel; Adrienne C Scheck; Robert Tibshirani; Branimir I Sikic
Journal:  JAMA       Date:  2009-07-15       Impact factor: 56.272

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