Literature DB >> 11011079

Improved RNA extraction and one-tube RT-PCR assay for simultaneous detection of control plant RNA plus several viruses in plant extracts.

A Nassuth1, E Pollari, K Helmeczy, S Stewart, S A Kofalvi.   

Abstract

A procedure was developed for simultaneous detection of plant RNA viruses and of plant RNA, as a control. RT-PCR amplification with primers designed for the detection of the plant mRNAs encoding malate dehydrogenase (MDH) and the large subunit of ribulose bisphosphate carboxylase oxygenase (RubiscoL) was used for the development of a plant extraction procedure that consistently yields extracts that can be amplified. The control amplification was used successfully on extracts from cane, leaf and/or bud tissues from grapevine, apple, raspberry, strawberry, peach, apricot, plum and wheat. Multiplex RT-PCR conditions were established for the simultaneous detection in grapevine extracts of either arabis mosaic virus, rupestris stem pitting associated virus and malate dehydrogenase mRNA, or grapevine virus A, grapevine virus B, grapevine leafroll associated virus-3, and RubiscoL mRNA.

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Year:  2000        PMID: 11011079     DOI: 10.1016/s0166-0934(00)00211-1

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  10 in total

1.  Small RNA Sequencing and Multiplex RT-PCR for Diagnostics of Grapevine Viruses and Virus-like Organisms.

Authors:  Vanja Miljanić; Jernej Jakše; Denis Rusjan; Andreja Škvarč; Nataša Štajner
Journal:  Viruses       Date:  2022-04-28       Impact factor: 5.818

2.  Molecular Detection of Latent Apple chlorotic leaf spot virus in Elite Mother Plants of Apple.

Authors:  P D Thakur; Anil Handa; K K Pramanick; Y P Sharma; Manica Tomar
Journal:  Indian J Virol       Date:  2012-10-11

3.  Rootstock effects on gene expression patterns in apple tree scions.

Authors:  Philip J Jensen; Jo Rytter; Elizabeth A Detwiler; James W Travis; Timothy W McNellis
Journal:  Plant Mol Biol       Date:  2003-11       Impact factor: 4.076

4.  Stress- and development-induced expression of spliced and unspliced transcripts from two highly similar dehydrin 1 genes in V. riparia and V. vinifera.

Authors:  Huogen Xiao; Annette Nassuth
Journal:  Plant Cell Rep       Date:  2006-03-22       Impact factor: 4.570

5.  Reconstruction and Characterization of Full-Length Begomovirus and Alphasatellite Genomes Infecting Pepper through Metagenomics.

Authors:  Verónica A Bornancini; José M Irazoqui; Ceferino R Flores; Carlos G Vaghi Medina; Ariel F Amadio; Paola M López Lambertini
Journal:  Viruses       Date:  2020-02-11       Impact factor: 5.048

Review 6.  Current and Prospective Methods for Plant Disease Detection.

Authors:  Yi Fang; Ramaraja P Ramasamy
Journal:  Biosensors (Basel)       Date:  2015-08-06

7.  Extractions of High Quality RNA from the Seeds of Jerusalem Artichoke and Other Plant Species with High Levels of Starch and Lipid.

Authors:  Tanupat Mornkham; Preeya Puangsomlee Wangsomnuk; Yong-Bi Fu; Pinich Wangsomnuk; Sanun Jogloy; Aran Patanothai
Journal:  Plants (Basel)       Date:  2013-04-29

8.  Peach RNA viromes in six different peach cultivars.

Authors:  Yeonhwa Jo; Sen Lian; Hyosub Chu; Jin Kyong Cho; Su-Hyun Yoo; Hoseong Choi; Ju-Yeon Yoon; Seung-Kook Choi; Bong Choon Lee; Won Kyong Cho
Journal:  Sci Rep       Date:  2018-01-30       Impact factor: 4.379

Review 9.  Plant Pest Detection Using an Artificial Nose System: A Review.

Authors:  Shaoqing Cui; Peter Ling; Heping Zhu; Harold M Keener
Journal:  Sensors (Basel)       Date:  2018-01-28       Impact factor: 3.576

10.  Functional MYB transcription factor gene HtMYB2 is associated with anthocyanin biosynthesis in Helianthus tuberosus L.

Authors:  Jieming Gao; Xuemei Sun; Yuan Zong; Shipeng Yang; Lihui Wang; Baolong Liu
Journal:  BMC Plant Biol       Date:  2020-06-01       Impact factor: 4.215

  10 in total

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