Literature DB >> 10998382

Comparative genomics and understanding of microbial biology.

C M Fraser1, J Eisen, R D Fleischmann, K A Ketchum, S Peterson.   

Abstract

The sequences of close to 30 microbial genomes have been completed during the past 5 years, and the sequences of more than 100 genomes should be completed in the next 2 to 4 years. Soon, completed microbial genome sequences will represent a collection of >200,000 predicted coding sequences. While analysis of a single genome provides tremendous biological insights on any given organism, comparative analysis of multiple genomes provides substantially more information on the physiology and evolution of microbial species and expands our ability to better assign putative function to predicted coding sequences.

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Substances:

Year:  2000        PMID: 10998382      PMCID: PMC2627966          DOI: 10.3201/eid0605.000510

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN: 1080-6040            Impact factor:   6.883


  31 in total

1.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

Review 2.  Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis.

Authors:  J A Eisen
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Authors:  D R Smith; L A Doucette-Stamm; C Deloughery; H Lee; J Dubois; T Aldredge; R Bashirzadeh; D Blakely; R Cook; K Gilbert; D Harrison; L Hoang; P Keagle; W Lumm; B Pothier; D Qiu; R Spadafora; R Vicaire; Y Wang; J Wierzbowski; R Gibson; N Jiwani; A Caruso; D Bush; J N Reeve
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

4.  The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Authors:  F Kunst; N Ogasawara; I Moszer; A M Albertini; G Alloni; V Azevedo; M G Bertero; P Bessières; A Bolotin; S Borchert; R Borriss; L Boursier; A Brans; M Braun; S C Brignell; S Bron; S Brouillet; C V Bruschi; B Caldwell; V Capuano; N M Carter; S K Choi; J J Cordani; I F Connerton; N J Cummings; R A Daniel; F Denziot; K M Devine; A Düsterhöft; S D Ehrlich; P T Emmerson; K D Entian; J Errington; C Fabret; E Ferrari; D Foulger; C Fritz; M Fujita; Y Fujita; S Fuma; A Galizzi; N Galleron; S Y Ghim; P Glaser; A Goffeau; E J Golightly; G Grandi; G Guiseppi; B J Guy; K Haga; J Haiech; C R Harwood; A Hènaut; H Hilbert; S Holsappel; S Hosono; M F Hullo; M Itaya; L Jones; B Joris; D Karamata; Y Kasahara; M Klaerr-Blanchard; C Klein; Y Kobayashi; P Koetter; G Koningstein; S Krogh; M Kumano; K Kurita; A Lapidus; S Lardinois; J Lauber; V Lazarevic; S M Lee; A Levine; H Liu; S Masuda; C Mauël; C Médigue; N Medina; R P Mellado; M Mizuno; D Moestl; S Nakai; M Noback; D Noone; M O'Reilly; K Ogawa; A Ogiwara; B Oudega; S H Park; V Parro; T M Pohl; D Portelle; S Porwollik; A M Prescott; E Presecan; P Pujic; B Purnelle; G Rapoport; M Rey; S Reynolds; M Rieger; C Rivolta; E Rocha; B Roche; M Rose; Y Sadaie; T Sato; E Scanlan; S Schleich; R Schroeter; F Scoffone; J Sekiguchi; A Sekowska; S J Seror; P Serror; B S Shin; B Soldo; A Sorokin; E Tacconi; T Takagi; H Takahashi; K Takemaru; M Takeuchi; A Tamakoshi; T Tanaka; P Terpstra; A Togoni; V Tosato; S Uchiyama; M Vandebol; F Vannier; A Vassarotti; A Viari; R Wambutt; H Wedler; T Weitzenegger; P Winters; A Wipat; H Yamamoto; K Yamane; K Yasumoto; K Yata; K Yoshida; H F Yoshikawa; E Zumstein; H Yoshikawa; A Danchin
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

5.  The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  G Deckert; P V Warren; T Gaasterland; W G Young; A L Lenox; D E Graham; R Overbeek; M A Snead; M Keller; M Aujay; R Huber; R A Feldman; J M Short; G J Olsen; R V Swanson
Journal:  Nature       Date:  1998-03-26       Impact factor: 49.962

6.  A phylogenomic study of the MutS family of proteins.

Authors:  J A Eisen
Journal:  Nucleic Acids Res       Date:  1998-09-15       Impact factor: 16.971

7.  The genome sequence of Rickettsia prowazekii and the origin of mitochondria.

Authors:  S G Andersson; A Zomorodipour; J O Andersson; T Sicheritz-Pontén; U C Alsmark; R M Podowski; A K Näslund; A S Eriksson; H H Winkler; C G Kurland
Journal:  Nature       Date:  1998-11-12       Impact factor: 49.962

8.  Molecular archaeology of the Escherichia coli genome.

Authors:  J G Lawrence; H Ochman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

9.  Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum.

Authors:  M J Gardner; H Tettelin; D J Carucci; L M Cummings; L Aravind; E V Koonin; S Shallom; T Mason; K Yu; C Fujii; J Pederson; K Shen; J Jing; C Aston; Z Lai; D C Schwartz; M Pertea; S Salzberg; L Zhou; G G Sutton; R Clayton; O White; H O Smith; C M Fraser; M D Adams; J C Venter; S L Hoffman
Journal:  Science       Date:  1998-11-06       Impact factor: 47.728

10.  Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.

Authors:  R S Stephens; S Kalman; C Lammel; J Fan; R Marathe; L Aravind; W Mitchell; L Olinger; R L Tatusov; Q Zhao; E V Koonin; R W Davis
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

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  12 in total

1.  Complete genomic sequence of Pasteurella multocida, Pm70.

Authors:  B J May; Q Zhang; L L Li; M L Paustian; T S Whittam; V Kapur
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

2.  Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds.

Authors:  Parag Mallick; Daniel R Boutz; David Eisenberg; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-09       Impact factor: 11.205

3.  Genomic interrogation of the dassie bacillus reveals it as a unique RD1 mutant within the Mycobacterium tuberculosis complex.

Authors:  Serge Mostowy; Debby Cousins; Marcel A Behr
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

4.  Application of physical and genetic map of Rhizobium leguminosarum bv. trifolii TA1 to comparison of three closely related rhizobial genomes.

Authors:  Jaroslaw E Król; Andrzej Mazur; Malgorzata Marczak; Anna Skorupska
Journal:  Mol Genet Genomics       Date:  2007-10-25       Impact factor: 3.291

5.  Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

Authors:  Vladimir Lazarevic; Katrine Whiteson; Susan Huse; David Hernandez; Laurent Farinelli; Magne Osterås; Jacques Schrenzel; Patrice François
Journal:  J Microbiol Methods       Date:  2009-09-29       Impact factor: 2.363

6.  Genomic analysis distinguishes Mycobacterium africanum.

Authors:  Serge Mostowy; Anthony Onipede; Sebastien Gagneux; Stefan Niemann; Kristin Kremer; Edward P Desmond; Midori Kato-Maeda; Marcel Behr
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

7.  Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.

Authors:  Shivakumara Siddaramappa; Jean F Challacombe; Alison J Duncan; Allison F Gillaspy; Matthew Carson; Jenny Gipson; Joshua Orvis; Jeremy Zaitshik; Gentry Barnes; David Bruce; Olga Chertkov; J Chris Detter; Cliff S Han; Roxanne Tapia; Linda S Thompson; David W Dyer; Thomas J Inzana
Journal:  BMC Genomics       Date:  2011-11-23       Impact factor: 3.969

8.  The complexity of simplicity.

Authors:  S N Peterson; C M Fraser
Journal:  Genome Biol       Date:  2001-02-08       Impact factor: 13.583

9.  Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance.

Authors:  Giovanni Satta; Adam A Witney; Robert J Shorten; Magdalena Karlikowska; Marc Lipman; Timothy D McHugh
Journal:  BMC Med       Date:  2016-08-16       Impact factor: 8.775

10.  Complementation of the Mycoplasma synoviae MS-H vaccine strain with wild-type obg influencing its growth characteristics.

Authors:  Muhammad A Shahid; Marc S Marenda; Philip F Markham; Amir H Noormohammadi
Journal:  PLoS One       Date:  2018-03-28       Impact factor: 3.240

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