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Literature DB >> 10998381

Genomics and bacterial pathogenesis.

Abstract

Whole-genome sequencing is transforming the study of pathogenic bacteria. Searches for single virulence genes can now be performed on a genomewide scale by a variety of computer and genetic techniques. These techniques are discussed to provide a perspective on the developing field of genomics.

Mesh：

Year: 2000 PMID： 10998381 PMCID： PMC2627964 DOI： 10.3201/eid0605.000509

Source DB: PubMed Journal: Emerg Infect Dis ISSN： 1080-6040 Impact factor: 6.883

39 in total

1. Systematic identification of essential genes by in vitro mariner mutagenesis.

Authors: B J Akerley; E J Rubin; A Camilli; D J Lampe; H M Robertson; J J Mekalanos
Journal: Proc Natl Acad Sci U S A Date: 1998-07-21 Impact factor: 11.205

Review 2. Whole genome scan for habitat-specific genes by signature-tagged mutagenesis.

Authors: M Hensel
Journal: Electrophoresis Date: 1998-04 Impact factor: 3.535

Review 3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors: S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal: Nucleic Acids Res Date: 1997-09-01 Impact factor: 16.971

4. The complete genome sequence of Escherichia coli K-12.

Authors: F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal: Science Date: 1997-09-05 Impact factor: 47.728

5. Simple sequence repeats in the Helicobacter pylori genome.

Authors: N J Saunders; J F Peden; D W Hood; E R Moxon
Journal: Mol Microbiol Date: 1998-03 Impact factor: 3.501

6. Identification of Staphylococcus aureus virulence genes in a murine model of bacteraemia using signature-tagged mutagenesis.

Authors: J M Mei; F Nourbakhsh; C W Ford; D W Holden
Journal: Mol Microbiol Date: 1997-10 Impact factor: 3.501

7. Use of signature-tagged transposon mutagenesis to identify Vibrio cholerae genes critical for colonization.

Authors: S L Chiang; J J Mekalanos
Journal: Mol Microbiol Date: 1998-02 Impact factor: 3.501

8. Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome.

Authors: M McClelland; R K Wilson
Journal: Infect Immun Date: 1998-09 Impact factor: 3.441

9. The genome sequence of Rickettsia prowazekii and the origin of mitochondria.

Authors: S G Andersson; A Zomorodipour; J O Andersson; T Sicheritz-Pontén; U C Alsmark; R M Podowski; A K Näslund; A S Eriksson; H H Winkler; C G Kurland
Journal: Nature Date: 1998-11-12 Impact factor: 49.962

10. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.

Authors: R S Stephens; S Kalman; C Lammel; J Fan; R Marathe; L Aravind; W Mitchell; L Olinger; R L Tatusov; Q Zhao; E V Koonin; R W Davis
Journal: Science Date: 1998-10-23 Impact factor: 47.728

14 in total

1. Automated PCR/sequence template purification.

Authors: S C Clarke; M A Diggle
Journal: Mol Biotechnol Date: 2002-07 Impact factor: 2.695

Review 2. Future trends and challenges in pathogenomics. A Foresight study.

Authors: Sven Pompe; Judith Simon; Peter M Wiedemann; Christof Tannert
Journal: EMBO Rep Date: 2005-07 Impact factor: 8.807

3. Defining mycobacteria: Shared and specific genome features for different lifestyles.

Authors: Varalakshmi D Vissa; Rama Murthy Sakamuri; Wei Li; Patrick J Brennan
Journal: Indian J Microbiol Date: 2009-02-05 Impact factor: 2.461

4. Multilocus sequence typing for studying genetic relationships among Yersinia species.

Authors: Mamuka Kotetishvili; Arnold Kreger; Georges Wauters; J Glenn Morris; Alexander Sulakvelidze; O Colin Stine
Journal: J Clin Microbiol Date: 2005-06 Impact factor: 5.948

5. Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

Authors: Sébastien Gallien; Emmanuel Perrodou; Christine Carapito; Caroline Deshayes; Jean-Marc Reyrat; Alain Van Dorsselaer; Olivier Poch; Christine Schaeffer; Odile Lecompte
Journal: Genome Res Date: 2008-10-27 Impact factor: 9.043

6. Molecular analysis as an aid to assess the public health risk of non-O157 Shiga toxin-producing Escherichia coli strains.

Authors: Brian K Coombes; Mark E Wickham; Mariola Mascarenhas; Samantha Gruenheid; B Brett Finlay; Mohamed A Karmali
Journal: Appl Environ Microbiol Date: 2008-02-01 Impact factor: 4.792

7. ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Authors: Emmanuel Perrodou; Caroline Deshayes; Jean Muller; Christine Schaeffer; Alain Van Dorsselaer; Raymond Ripp; Olivier Poch; Jean-Marc Reyrat; Odile Lecompte
Journal: Nucleic Acids Res Date: 2006-01-01 Impact factor: 16.971

8. Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

Authors: Caroline Deshayes; Emmanuel Perrodou; Sebastien Gallien; Daniel Euphrasie; Christine Schaeffer; Alain Van-Dorsselaer; Olivier Poch; Odile Lecompte; Jean-Marc Reyrat
Journal: Genome Biol Date: 2007 Impact factor: 13.583

9. Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228.

Authors: Wu Wei; ZhiWei Cao; Yu-Li Zhu; XiaoJing Wang; GuoHui Ding; Hao Xu; PeiLin Jia; Di Qu; Antoine Danchin; YiXue Li
Journal: BMC Genomics Date: 2006-05-10 Impact factor: 3.969

10. On detection and assessment of statistical significance of Genomic Islands.

Authors: Raghunath Chatterjee; Keya Chaudhuri; Probal Chaudhuri
Journal: BMC Genomics Date: 2008-04-01 Impact factor: 3.969