Literature DB >> 10991145

Order of the phase transition in models of DNA thermal denaturation.

N Theodorakopoulos1, T Dauxois, M Peyrard.   

Abstract

We examine the behavior of a model which describes the melting of double-stranded DNA chains. The model, with displacement-dependent stiffness constants and a Morse on-site potential, is analyzed numerically; depending on the stiffness parameter, it is shown to have either (i) a second-order transition with nu( perpendicular) = -beta = 1,nu(||) = gamma/2 = 2 (characteristic of short-range attractive part of the Morse potential) or (ii) a first-order transition with finite melting entropy, discontinuous fraction of bound pairs, divergent correlation lengths, and critical exponents nu( perpendicular) = -beta = 1/2,nu(||) = gamma/2 = 1.

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Year:  2000        PMID: 10991145     DOI: 10.1103/PhysRevLett.85.6

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

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3.  Bubbles and denaturation in DNA.

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5.  Dynamics of intramolecular recognition: base-pairing in DNA/RNA near and far from equilibrium.

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6.  Nonlinear analysis of the dynamics of DNA breathing.

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Journal:  J Biol Phys       Date:  2009-02-12       Impact factor: 1.365

7.  Stacking interactions in denaturation of DNA fragments.

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Journal:  Eur Phys J E Soft Matter       Date:  2011-07-14       Impact factor: 1.890

8.  Solid-liquid critical behavior of water in nanopores.

Authors:  Kenji Mochizuki; Kenichiro Koga
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

9.  Can we model DNA at the mesoscale?

Authors:  S Cuesta-López; J Errami; F Falo; M Peyrard
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

10.  An effective mesoscopic model of double-stranded DNA.

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Journal:  J Biol Phys       Date:  2013-12-05       Impact factor: 1.365

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