Literature DB >> 10982816

15N NMR relaxation studies of free and ligand-bound human acidic fibroblast growth factor.

Y Chi1, T K Kumar, I M Chiu, C Yu.   

Abstract

15N NMR relaxation data have been used to characterize the backbone dynamics of the human acidic fibroblast growth factor (hFGF-1) in its free and sucrose octasulfate (SOS)-bound states. (15)N longitudinal (R(1)), transverse (R(2)) relaxation rates and (1H)-(15)N steady-state nuclear Overhauser effects were obtained at 500 and 600 MHz (at 25 degrees C) for all resolved backbone amide groups using (1)H- detected two-dimensional NMR experiments. Relaxation data were fit to the extended model free dynamics for each NH group. The overall correlation time (tau(m)) for the free and SOS-bound forms were estimated to be 10.4 +/- 1.07 and 11.1 +/- 1.35 ns, respectively. Titration experiments with SOS reveals that the ligand binds specifically to the C-terminal domain of the protein in a 1:1 ratio. Binding of SOS to hFGF-1 is found to induce a subtle conformational change in the protein. Significant conformational exchange (R(ex)) is observed for several residues in the free form of the protein. However, in the SOS-bound form only three residues exhibit significant R(ex) values, suggesting that the dynamics on the micro- to millisecond time scale in the free form is coupled to the cis-trans-proline isomerization. hFGF-1 is a rigid molecule with an average generalized parameter (S(2)) value of 0.89 +/- 0.03. Upon binding to SOS, there is a marked decrease in the overall flexibility (S(2) = 0.94 +/- 0.02) of the hFGF-1 molecule. However, the segment comprising residues 103-111 shows increased flexibility in the presence of SOS. Significant correlation is found between residues that show high flexibility and the putative receptor binding sites on the protein.

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Year:  2000        PMID: 10982816     DOI: 10.1074/jbc.M007205200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  5 in total

1.  Backbone dynamics of a biologically active human FGF-1 monomer, complexed to a hexasaccharide heparin-analogue, by 15N NMR relaxation methods.

Authors:  Angeles Canales-Mayordomo; Rosa Fayos; Jesús Angulo; Rafael Ojeda; Manuel Martín-Pastor; Pedro M Nieto; Manuel Martín-Lomas; Rosa Lozano; Guillermo Giménez-Gallego; Jesús Jiménez-Barbero
Journal:  J Biomol NMR       Date:  2006-07-29       Impact factor: 2.835

2.  Molecular cloning, overexpression and characterization of human interleukin 1alpha.

Authors:  Dakshinamurthy Rajalingam; Doreen Kacer; Igor Prudovsky; Thallapuranam Krishnaswamy Suresh Kumar
Journal:  Biochem Biophys Res Commun       Date:  2007-06-28       Impact factor: 3.575

3.  Structurally homologous all beta-barrel proteins adopt different mechanisms of folding.

Authors:  Thiagarajan Srimathi; Thallampuranam Krishnaswamy S Kumar; Karuppanan Muthusamy Kathir; Ya-Hui Chi; Sampath Srisailam; Wann-Yin Lin; Ing-Ming Chiu; Chin Yu
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

4.  Investigating the dynamics and polyanion binding sites of fibroblast growth factor-1 using hydrogen-deuterium exchange mass spectrometry.

Authors:  Siva K Angalakurthi; Connie A Tenorio; Michael Blaber; Charles Russell Middaugh
Journal:  Protein Sci       Date:  2018-05-03       Impact factor: 6.725

5.  Prediction of protein motions from amino acid sequence and its application to protein-protein interaction.

Authors:  Shuichi Hirose; Kiyonobu Yokota; Yutaka Kuroda; Hiroshi Wako; Shigeru Endo; Satoru Kanai; Tamotsu Noguchi
Journal:  BMC Struct Biol       Date:  2010-07-13
  5 in total

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